RetrogeneDB ID: retro_tsyr_288

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: GeneScaffold_7207:2526..3126(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GNAI3
• Ensembl ID: ENSTSYG00000000556
• Aliases: None
• Description: guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3 [Source:HGNC Symbol;Acc:4387]

Sequence

>retro_tsyr_288
TACCTAAATGATTTGGATAGACTATCCCAAACCAACTACATTCCAACTCAGCAAGATGTTCTTCGGACAAGAGTGAAGAC
CACAGGCATTGTGGAAACGCATTTCACCTTCAAAGGCCTATACTTCAAGATGTCTGATGTAGGTGGCCAAAGATCAGAAT
GAAAAAAGTGGATCCACTGTTTTGAGGGTGTGACAGCAATTATCTTCGGTGTGGCCCTCAGTGATTATGACCCTGTTCTG
GCTGAGGATGAGGAGATGAACCGAATGCATGAGAGCATGAAACTGTTTGACAGCATTTGTAATAACAAATGGTTTACAGA
CACTTCAATCATTCTCTTCCTTAACAAGAAAGACCTTTTTGAGGTCAAAATAAAGAGGAGTCCATTAACTATCTGTTATC
CAGAATACACAGGTTCCAGTACATATGAAGAGGCGGCTGCTTAAATTCAGTGTCAGTTTGAAGATCTGAACAGAAGAAAA
GACACCAAGGAGATCTACACTCACTTCACTTGCGCCACAGACACCAAGAACACGCAGTTTGTTTTTGATGCTGTTACAGA
TGTCATCATTAAAAACAACTTAAAGGAATGTGGACTGTAT

Alignment

ORF - retro_tsyr_288 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95. %
• Parental protein coverage: 57.47 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  YLNDLDRISQTNYIPTQQDVLRTRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFC
          YLNDLDR.SQTNYIPTQQDVLRTRVKTTGIVETHFTFK.LYFKM.DVGGQRSE.KKWIHCFEGVTAIIF.
Retrocopy YLNDLDRLSQTNYIPTQQDVLRTRVKTTGIVETHFTFKGLYFKMSDVGGQRSE*KKWIHCFEGVTAIIFG

Parental  VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKRSPLTICYPEYTGSN
          VALSDYD.VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFE.KIKRSPLTICYPEYTGS.
Retrocopy VALSDYDPVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEVKIKRSPLTICYPEYTGSS

Parental  TYEEAAAYIQCQFEDLNRRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKECGLY
          TYEEAAA.IQCQFEDLNRRKDTKEIYTHFTCATDTKN.QFVFDAVTDVIIKNNLKECGLY
Retrocopy TYEEAAA*IQCQFEDLNRRKDTKEIYTHFTCATDTKNTQFVFDAVTDVIIKNNLKECGLY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_288 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000010970	1 retrocopy	retro_acar_40,
Choloepus hoffmanni	ENSCHOG00000012718	1 retrocopy	retro_chof_359,
Ciona intestinalis	ENSCING00000005305	1 retrocopy	retro_cint_14,
Ciona savignyi	ENSCSAVG00000001800	1 retrocopy	retro_csav_19,
Otolemur garnettii	ENSOGAG00000013587	1 retrocopy	retro_ogar_993,
Tupaia belangeri	ENSTBEG00000015771	1 retrocopy	retro_tbel_2449,
Tarsius syrichta	ENSTSYG00000000556	1 retrocopy	retro_tsyr_288 ,