RetrogeneDB ID: | retro_tsyr_323 | ||
Retrocopy location | Organism: | Tarsier (Tarsius syrichta) | |
| Coordinates: | GeneScaffold_8244:47566..47907(-) | ||
| Located in intron of: | ENSTSYG00000005341 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | PSMC3IP | ||
| Ensembl ID: | ENSTSYG00000007620 | ||
| Aliases: | None | ||
| Description: | PSMC3 interacting protein [Source:HGNC Symbol;Acc:17928] |
Retrocopy-Parental alignment summary:
>retro_tsyr_323
AAAGGCCAGGCAGAAGCTGCAGCAGGAGCCACCAGGATCCTCCTGAGGTACCTGCAAGAGCAGAACCAGCCCTACAGCAC
CCAGGACTTGTTCAGGACCCTGTAGTAGGAACACGGCCTGGGCAAGGCGGTGGTGGTGAAGGCACTGGAGCAGCTGACCC
AGCAAAGAAAGATCAAAGAGAAAGTGTATGGCAAGCAGAAGATCTATTTTGCAGAAGTGGACCAGTTTAACACAGTGAGT
GATGCTGACCTTCAAGCCTGGATGCCAAAATCGTGGCCCTTACTGCTAATGTGCAGACCTTGCAGCAGAGCTGCTGCTAC
ATGGAGTTTCAGCTGAAGGAG
ORF - retro_tsyr_323 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 73.91 % |
| Parental protein coverage: | 55.39 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | KGRAEAAAGAAGILLRYLQEQNRPYSAQDVFGNLQGEHGLGKAAVVKALEQLAQQGKVKEKVYGKQKV-F |
| KG.AEAAAGA..ILLRYLQEQN.PYS.QD.F..L..EHGLGKA.VVKALEQL.QQ.K.KEKVYGKQK..F | |
| Retrocopy | KGQAEAAAGATRILLRYLQEQNQPYSTQDLFRTL**EHGLGKAVVVKALEQLTQQRKIKEKVYGKQKIYF |
| Parental | ADQDQFDTVSDADLR-DLDVKIVALTANVQSLQQSCRYMEAEMQK |
| A..DQF.TVSDADL...LD.KIVALTANVQ.LQQSC.YME..... | |
| Retrocopy | AEVDQFNTVSDADLQ<SLDAKIVALTANVQTLQQSCCYMEFQLKE |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_323 was not experimentally validated.
Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Microcebus murinus | ENSMICG00000010266 | 1 retrocopy | |
| Tarsius syrichta | ENSTSYG00000007620 | 1 retrocopy |
retro_tsyr_323 ,
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