RetrogeneDB ID: | retro_tsyr_499 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_129229:971..1336(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRNP25 | ||
Ensembl ID: | ENSTSYG00000000091 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein 25kDa (U11/U12) [Source:HGNC Symbol;Acc:14161] |
Percent Identity: | 79.67 % |
Parental protein coverage: | 55.76 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | RLLPAALEAAEAVSRS-EAQEDDEDEEEALPHSEAVDVFQEGLAMVVQDPMLCDLPIQXXXEEVNSQI-I |
RLL...LE..EAVSRS..AQEDDED.EEALPHS.AVD.FQEGLAMVVQD..LCDLPIQ...EEVNS.I.. | |
Retrocopy | RLLQETLEETEAVSRS<KAQEDDEDGEEALPHSKAVDAFQEGLAMVVQDLLLCDLPIQVTLEEVNSPIAL |
Parental | EYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGIQHIS |
EY.QAMTV.VCK.DGEVMPVVVVQNATVLDLKKA.QRYVQL.QE.E.GIQHIS | |
Retrocopy | EYDQAMTV*VCKIDGEVMPVVVVQNATVLDLKKAMQRYVQLEQECERGIQHIS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Otolemur garnettii | ENSOGAG00000002527 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000091 | 2 retrocopies |
retro_tsyr_1686, retro_tsyr_499 ,
|