RetrogeneDB ID: retro_tsyr_519

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_13261:15076..15907(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: WDSUB1
• Ensembl ID: ENSTSYG00000001741
• Aliases: None
• Description: WD repeat, sterile alpha motif and U-box domain containing 1 [Source:HGNC Symbol;Acc:26697]

Sequence

>retro_tsyr_519
GGACATATTTTGGCATCATGTTCAACAGATGGTACCACTGTCCTATGGAATACTCAAAATGGACAGACTTTGGCAGTGAT
GGAACAGCCTAGTGGCAGCCCCGTGAGGGTTTGCCAGTTTTCTCCAGACTCCACTTGTTTGGCATCAGGTGCCACTGACG
GAACTGTTGTTTTGTGGAATGCACAGTCATACAAGTTATATAGATGTGGTAGTGTTAAGGATGGCTCCTTGGTGGCGTGT
GCATTTTCTCCTGATGGAAACCTCTTTGTCACTGGCTCCTCATGTGGAGATTTAACAGTGTGGGATGATAAAATGAGGTG
TCTGCATGGTGAAAAAGCACATGATCTGGGAATTTCATGCTGTGATTTTTCTTCACAGCCAGTTTCTGATGGAGAACAAA
GCCCTCAGTTTTTTCGATTGGCATCATGTGGTCAGGATTGCCAAGTCAAAATTGGGGTTGTTTCTTTTACCCATATCATC
TTAGGTTTTAAATTAAAATATAAAAGTACACTTAGTGGGCACTGTGCTCCTGTTCTGACTTGTGCTTTTTCCCATGATGG
GCAGATGCTAGTCTCAGGCTCAGTGGATGAGTCTGTCATAGTATATGATACCAATACTGAGAACATACTTCACACGTTGA
CTCAGTACACCAGGTATGTCACAACTTGTGCCTTTGCACCTAATACACTTTTACTTGCTACTGGTTCAATGGACAAAACG
GTGAACGTCTGGCAATTTGACATGAAAACACTTTGCCAAGCAAGGAGCACAGAAGATCTGCTAAAGCGATTTACTGAAGA
TTGGTCAGAGGAGGATGTCTCAATGCGGCTT

Alignment

ORF - retro_tsyr_519 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.22 %
• Parental protein coverage: 73.8 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GHI-ASCSTDGPTVLRNTQNGQTSAVMEQHSGSPVRVCQFYPDSTCLASGAADGTVVLWNAQSYKLYRCG
          GHI.ASCSTDG.TVL.NTQNGQT.AVMEQ.SGSPVRVCQF.PDSTCLASGA.DGTVVLWNAQSYKLYRCG
Retrocopy GHILASCSTDGTTVLWNTQNGQTLAVMEQPSGSPVRVCQFSPDSTCLASGATDGTVVLWNAQSYKLYRCG

Parental  SVKDGSLVACAFSPDGNLFVTGSSCGDLTVWDDKMRCLHSEKAHDLGISCCDFSSQPVSDGEQSPQFFRL
          SVKDGSLVACAFSPDGNLFVTGSSCGDLTVWDDKMRCLH.EKAHDLGISCCDFSSQPVSDGEQSPQFFRL
Retrocopy SVKDGSLVACAFSPDGNLFVTGSSCGDLTVWDDKMRCLHGEKAHDLGISCCDFSSQPVSDGEQSPQFFRL

Parental  ASCGQDCQVKIWVVSFTHIILGFKLKYQSTLSGHCAPVLTCAFSHDGRMLVSGSVDKSVIVYDTNTENIL
          ASCGQDCQVKI.VVSFTHIILGFKLKY.STLSGHCAPVLTCAFSHDG.MLVSGSVD.SVIVYDTNTENIL
Retrocopy ASCGQDCQVKIGVVSFTHIILGFKLKYKSTLSGHCAPVLTCAFSHDGQMLVSGSVDESVIVYDTNTENIL

Parental  HTLTQHTRYVTTCAFAPNTLLLATGSMDKTVNIWQFDMKTLCQARSTEDLLKRFTEDWSEEEVSMWL
          HTLTQ.TRYVTTCAFAPNTLLLATGSMDKTVN.WQFDMKTLCQARSTEDLLKRFTEDWSEE.VSM.L
Retrocopy HTLTQYTRYVTTCAFAPNTLLLATGSMDKTVNVWQFDMKTLCQARSTEDLLKRFTEDWSEEDVSMRL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_519 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Loxodonta africana	ENSLAFG00000009831	1 retrocopy	retro_lafr_746,
Tarsius syrichta	ENSTSYG00000001741	1 retrocopy	retro_tsyr_519 ,