RetrogeneDB ID: retro_tsyr_753

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_18925:20114..20837(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ALAD
• Ensembl ID: ENSTSYG00000006183
• Aliases: None
• Description: aminolevulinate dehydratase [Source:HGNC Symbol;Acc:395]

Sequence

>retro_tsyr_753
CTGGGGGAAGAAGGCCTGCCCTGTGTCCTGATCTTCGGCATTCTCTGCAGAGTTCCCAAGGATAAGCAGGGCTCCCCTGC
TGACTCTGAGGGTTCCTTAGCCGTTGAGGCCATCCGTCTGTTGAGGAAAACCTTCCTCAACCTTCTGGTGGCCTACGATG
TCTACCTGTGCCCCTACACCTCCCCTGGTCACTGTGGGCTCCTGAATTAAAATGGAGAGTTTGGGGCTGAGGAGAGCTGC
CAGTAGCTGATAGAGGTAGTACTGGCATATGCCAAGGCAGGACGTCAGGAAGGAGCCCCGTCGGACATGATGGATGGACA
CGTGGAAGCGAACAGGGAGGCCCTGATGGCACACGGATTTGGCAACAGGGTATCAGTGTTGAGTAATAGAGCCAAGTTTG
CTTCCTGTTTCTATGGGTCTTTCTGGGATGGGGCTCAGTCACGCCCAGCTTTTGGAGACTGCTGCTGCTACCCGCTACCC
CCTGGAGCACGAGGCCTGACCCTCCAAGAAATAGATGGATGGGAAGGAGCTGACATGCTCATGGTGAAGCAGGGAATGCC
CTGACTGGACCTCATGCAGGAGGTCAAGGACAAGCACTGCAAGCTCCCTCTTGCTGGGTACCATGTCTCTGGAGAGTTTG
CCAGGCTATGGCATGGAGCCCGGGTTGGGGCATTTGACCTTAAGGCTGCCGTCCTGGAGGCTGTGACTGCCTTCCACAAA
GCA

Alignment

ORF - retro_tsyr_753 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.07 %
• Parental protein coverage: 71.94 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LVEEGLCCVLIFGVPCRVPKDERGA-ADFKGSSTVEAIRLLRKTFPSRLVC-DVCLCPYTSHGHCGLLSE
          L.EEGL.CVLIFG..CRVPKD..G..AD..GS..VEAIRLLRKTF...LV..DV.LCPYTS.GHCGLL..
Retrocopy LGEEGLPCVLIFGILCRVPKDKQGSPADSEGSLAVEAIRLLRKTFLNLLVAYDVYLCPYTSPGHCGLLN*

Parental  NGAFRAEESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKEALMAHGFGNRVSVLSYSAKFASCFYGP
          NG.F.AEES.Q.L.EV.LAYAKAG.Q..APSDMMDG.VEA..EALMAHGFGNRVSVLS..AKFASCFYG.
Retrocopy NGEFGAEESCQ*LIEVVLAYAKAGRQEGAPSDMMDGHVEANREALMAHGFGNRVSVLSNRAKFASCFYGS

Parental  FRDAAQSSPAFGDRRCYQLPPGARGLALRAIDRDVREGADMLMVKPGMPYLDILREVKDKHPELPLAVYH
          F.D.AQS.PAFGD..CY.LPPGARGL.L..ID....EGADMLMVK.GMP.LD...EVKDKH..LPLA.YH
Retrocopy FWDGAQSRPAFGDCCCYPLPPGARGLTLQEIDG--WEGADMLMVKQGMP*LDLMQEVKDKHCKLPLAGYH

Parental  VSGEFAMLWHGAQAGAFDLKAAVLEAMTAFRRA
          VSGEFA.LWHGA..GAFDLKAAVLEA.TAF..A
Retrocopy VSGEFARLWHGARVGAFDLKAAVLEAVTAFHKA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_753 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tarsius syrichta	ENSTSYG00000006183	1 retrocopy	retro_tsyr_753 ,