RetrogeneDB ID: | retro_tsyr_8 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_41422:129..1683(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTSYG00000007762 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ALDH1A2 | ||
Ensembl ID: | ENSTSYG00000004549 | ||
Aliases: | None | ||
Description: | aldehyde dehydrogenase 1 family, member A2 [Source:HGNC Symbol;Acc:15472] |
Percent Identity: | 66.73 % |
Parental protein coverage: | 99.6 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LPSPTPNLEIKYTKIFINNEWQNSESGRVFPVYNPATGEQVCEVQEADKADIDKAVQAARLAFSLGSVWR |
LP.P.....I.Y...FINNEWQ...S...FP..NP.TGE....V.E.D.AD.D.AV.AAR.AF.LGS.WR | |
Retrocopy | LPNPILKPDICYSQLFINNEWQDALSKKTFPTINPTTGEVIGHVAEGDGADVDRAVKAAREAFRLGSPWR |
Parental | RMDASERGRLLDKLADLVERDRAVLATMESLNGGKPFLQAFYVDLQGVIKTLRYYAGWADKIHGMTIPVD |
RMDASERG.LL..LADLVERDR..LA..E.L..GKPF......DL..VIK..RY.AGWADK.HG.TIP.D | |
Retrocopy | RMDASERGQLLNRLADLVERDRVYLASLETLDNGKPFQESYALDLDEVIKVYRYFAGWADKWHGKTIPMD |
Parental | GDYFTFTRHEPIGVCGQIIPWNFPLLMFTWKIAPALCCGNTVVIKPAEQTPLSALYMGVLIKEAGFPPGV |
G..F.FTRHEP.GVCGQIIPWNFPL.M..WK.APAL..GNTVV.K.AEQTPLSALY...LIKEAGFPPGV | |
Retrocopy | GEHFCFTRHEPVGVCGQIIPWNFPLVMQGWKLAPALATGNTVVMKVAEQTPLSALYLASLIKEAGFPPGV |
Parental | INILPGYGPTAGAAIASHIGIDKIAFTGSTKVGKLIQEAAGRSNLKRVTLELGGKSPNIIFADADLDYAV |
.NI..GYGPTAGAAIA.H..IDK.AFTGST.VG.LIQ.AAG.SNLKRVTLELGGKSP.I..ADA..D.AV | |
Retrocopy | VNIITGYGPTAGAAIAQHVDIDKVAFTGSTEVGHLIQKAAGDSNLKRVTLELGGKSPSIVLADANMDHAV |
Parental | EQAHQGVFFNQGQCCTAGSRIFVEESIYEEFVRRSVERAKRRIVGSPFDPTTEQGPQIDKKQYNKILELI |
EQ.H...FFN.GQCC.AGSR.FVEESIY.EF..R.VE.AK.R.VG.PF...T.QGPQ.DK.Q...IL..I | |
Retrocopy | EQCHEALFFNMGQCCCAGSRTFVEESIYDEFLERTVEKAKQRKVGNPFQLDTQQGPQVDKEQFERILGYI |
Parental | QSGVAEGAKLECGGKGLGRKGFFIEPTVFSNVTDDMRIAKEEIFGPVQEILRFKTMDEVIERANNSDFGL |
Q.G..EGAKL.CGG...G..GFFI.PTVF..V.DDMRIAKEEIFGPVQ....F....EVIERANN...GL | |
Retrocopy | QLGQKEGAKLLCGGERFGDRGFFIKPTVFGGVQDDMRIAKEEIFGPVQPLFKFRKIEEVIERANNTRYGL |
Parental | VAAVFTNDINKALTVSSAMQAGTVWINCYNALNAQSPFGGFKMSGNGREMGEFGLREYSEVKTVTVKIPQ |
.AAVFT.D..KA.....A.QAGTVW.N.YN......PFGGFK.SGNGRE.GE.GL..Y.EVKTVT.K.PQ | |
Retrocopy | AAAVFTQDLDKAMYFTQALQAGTVWVNTYNIVTCHTPFGGFKESGNGRELGEDGLKAYTEVKTVTIKVPQ |
Parental | KNS |
KNS | |
Retrocopy | KNS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006418 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000012262 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000008641 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007113 | 1 retrocopy | |
Sorex araneus | ENSSARG00000012720 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000012217 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000004549 | 1 retrocopy |
retro_tsyr_8 ,
|
Tursiops truncatus | ENSTTRG00000002361 | 1 retrocopy |