RetrogeneDB ID:

retro_ttru_1037

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_100546:98864..100942(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:PHKB
Ensembl ID:ENSTTRG00000010397
Aliases:None
Description:phosphorylase kinase, beta [Source:HGNC Symbol;Acc:8927]


Retrocopy-Parental alignment summary:






>retro_ttru_1037
GGTTATCCTGTCATACCAAAGTACTACTCTGTGCCAGCTGATTTTGTAGAATATGAAAAAAGAAACCCTGGTAGTCAGAA
GCGATTTCCTAGCAACTGTGGCCGTGATGGAAAACTGCTTCTCTGGGGACAAGCCCTTTATGTCATCGCAAAACTCCTGG
CTGATGAATTAATTAGTCCTGAAGACATTGATCCTGTTCAGCGTTATGTCCCACTACAGAATCAACGTAATGTGAGCATG
AGGTTTTCCAATCAGGGCCCACTGGAAAATGATTTGGTTGTTTATGTAGCGCTCATAGCAGAAAGCCAACGCCTTCAAGT
TTTCCTCAACACATATGGTATTCAGACTCAAACTCCTCAACAGGTAGAACCCATTCAGATCTGGGCCCAGCAGGAGCTTG
TGAAAGCTTATTTCCATCTGGGGATCAATGAAAAATCAGGACTCTGCGGAAGGCCAGATAGGCCCATTGGCTGCCTCGGC
ACATCAAAGATTTATAGCATTCTAGGAAAGACTGTGGTTTGTTACCCTATCATCTTTGACCTAAGTGATTTCTACATGTC
TCAAGATGTTTTACTGCTGATAGATGACATAAAGAATGCACTACAGTTTATTAAGCAATACTGGAAAATGCATGGACATC
CACCTTTCCTTGTTCTCATCTGGGAAGACAATGTAAGAGGTAGCTGATTCAATCCCTTATTAGATATGCTGGCAGCTTTT
AAGAAAGGAGTGGTTGGAGGAGTGAAAGTTCACGTTGATCGTCTACAGACACTAATATCTGGAGCTGTGGTAGAACAACT
TGACTTCTTACGAATCAGTGACACAGAAGAGCTTCCAGAATTTAAGAGTTTTGAGGAACTAGAAGTTCCCAAACATTCAA
AAGTCAAAACGACAAAGCAGCACCTCCAATGCTCCTGAACAATTTAACAGCAGCCAGATGTCACCATTACTGAATGGAAA
AACAAACCCACCCAAGAAATTCTTCAAAAACTGAAAGACTGTAGTTGTCTGGCTAGCCAAGCCATCCTGCTGGGTATACT
GCTCAAAAGAGAAGGGCCCAACTTCATCACAAAGGAAGGTACCGTTTCTGATCACATTGAGAGAGTCTACAGAAGAGCTG
GCAGCAAAAAATGTTGGTCGGTGGTGCGCCATACAGCAAGTCTTTTAAGTAAACTAGTGGACAGCCTGGCCCCATCCATT
ACTAATGTTTTAGTGCAGGGCAAACAGGTAACTCTGGGTGCCTTTGGACATGAAGAAGAGGCTATCTCAATCCTTTGTCT
CCAAGAGTGATTAAGAACATCATCTATTACAAGTGTAATACCCATGATGAGAGGGAGTCGGTCATTCAGCAAGAACTGGT
CATTCACATTGGCTGGATCATCTCCAATAACCCGGAGTTATCCCGTGGCATGCTGAAAATACGAAGTGGGTGGATGATCC
ATGCTATGGGGTATGAACTACAGATCCGTGGCAGAAACAAGCCAGCCAGAGACTTATATCAGATGTCACCTAGTGAAGTG
AAACAGCTTCTCCTGGGTATTCTGCAGCCTCAACGGAATGGAAGATGTTGGCTGAACAGGTGTCAGATCGATGGGTCTTT
GAATAGAACTCCCCCTGAGTCCTATGACTGCGTGTGGCAGATCCTGGAGCACACACCCAATGGAATCATTGTAGCCGGAA
GGCATTTGCCCCAGCAACCAACCCTGTCAGATATGACCATGTATGAGATGAATTTCTCTTTCCTTGTTGAAGACATGTTG
GGAAATATTGACCAGCCAAAATACAGACAGATAGTTGTGGAGTTACTAATGGTTGTATCCATTGTACTGGAAAGAAACCC
TGAGCTAGAATTTCAAGACAAAGTAGATCTAGACAAACCGGCGAAAGAAGCATTTCATGAATTTCAAAAAGATGAGAGTC
TACTAAAAGAAGCTGAAAAACAAGATGACATGACTTCCTTTTACAGTACTCGCCCCCTGGGAAAAAGAGGAACATGCAGC
TATTTGACAAAGGTCGTGATGAATTTGCTGCTGGAAGGAGAAGTCAAGCCAAGCAATGATGACCCATGTCTGGTTAGC

ORF - retro_ttru_1037 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 89.8 %
Parental protein coverage: 63.49 %
Number of stop codons detected: 1
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalGYPVIPKYYFVPADFVEYEKRNPGSQKRFPSNCGRDGKLFLWGQALYVIAKLLADELISPKDIDPVQRYV
GYPVIPKYY.VPADFVEYEKRNPGSQKRFPSNCGRDGKL.LWGQALYVIAKLLADELISP.DIDPVQRYV
RetrocopyGYPVIPKYYSVPADFVEYEKRNPGSQKRFPSNCGRDGKLLLWGQALYVIAKLLADELISPEDIDPVQRYV
ParentalPLQNQRNVSMRFSNQGPLENDLVVYVALIAESQRLQVFLNTYGIQTQTPQQVEPIQIWAQQELVKAYFHL
PLQNQRNVSMRFSNQGPLENDLVVYVALIAESQRLQVFLNTYGIQTQTPQQVEPIQIWAQQELVKAYFHL
RetrocopyPLQNQRNVSMRFSNQGPLENDLVVYVALIAESQRLQVFLNTYGIQTQTPQQVEPIQIWAQQELVKAYFHL
ParentalGINEKLGLCGRPDRPIGCLGTSKIYRILGKTVVCYPIIFDLSDFYMSQDVLLLIDDIKNALQFIKQYWKM
GINEK.GLCGRPDRPIGCLGTSKIY.ILGKTVVCYPIIFDLSDFYMSQDVLLLIDDIKNALQFIKQYWKM
RetrocopyGINEKSGLCGRPDRPIGCLGTSKIYSILGKTVVCYPIIFDLSDFYMSQDVLLLIDDIKNALQFIKQYWKM
ParentalHGHPLFLVLIREDNIRGSRFNPILDMLAAFKNGVVGGVKVHVDRLQTLISGAVVEQLDFLRISDTEELPE
HGHP.FLVLI.EDN.RGS.FNP.LDMLAAFK.GVVGGVKVHVDRLQTLISGAVVEQLDFLRISDTEELPE
RetrocopyHGHPPFLVLIWEDNVRGS*FNPLLDMLAAFKKGVVGGVKVHVDRLQTLISGAVVEQLDFLRISDTEELPE
ParentalFKSFEELELPKHSKV-KRQSSTSNASEEEQEPDVT-ITEWKIKP-THEILQKLNDCSCLASQAILLGILL
FKSFEELE.PKHSKV.KRQSSTSNA.E.............K..P.T.EILQKL.DCSCLASQAILLGILL
RetrocopyFKSFEELEVPKHSKV>KRQSSTSNAPEQFNSSQMSPLLNGKTNP<TQEILQKLKDCSCLASQAILLGILL
ParentalKREGPNFITKEGTVSDHIERVYRRAGSKKCWLAVRYGAAFTQKFPSSIAPHITTFLVHGKQVTLGAFGHE
KREGPNFITKEGTVSDHIERVYRRAGSKKCW..VR..A....K...S.AP.IT..LV.GKQVTLGAFGHE
RetrocopyKREGPNFITKEGTVSDHIERVYRRAGSKKCWSVVRHTASLLSKLVDSLAPSITNVLVQGKQVTLGAFGHE
ParentalEEVIS-NPLSPRVIKNIIYYKCNTHDEREAVIQQELVIHIGWIISNNPELFRGMLKIRIGWIIHAMKYEL
EE.IS.NPLSPRVIKNIIYYKCNTHDERE.VIQQELVIHIGWIISNNPEL.RGMLKIR.GW.IHAM.YEL
RetrocopyEEAIS<NPLSPRVIKNIIYYKCNTHDERESVIQQELVIHIGWIISNNPELSRGMLKIRSGWMIHAMGYEL
ParentalQIRGGNKPARDLYQLSPTEVKQLLLDILQPQRNGRCWLNRRQIDGSLNRTPPGFYDRVWQILERTPNGII
QIRG.NKPARDLYQ.SP.EVKQLLL.ILQPQRNGRCWLNR.QIDGSLNRTPP..YD.VWQILE.TPNGII
RetrocopyQIRGRNKPARDLYQMSPSEVKQLLLGILQPQRNGRCWLNRCQIDGSLNRTPPESYDCVWQILEHTPNGII
ParentalVAGRHLPQQPTLSDMTMYEMNFSLLVEDMLGNIDQPKYRQIVVELLMVVSIVLERNPELEFQDKVDLDKL
VAGRHLPQQPTLSDMTMYEMNFS.LVEDMLGNIDQPKYRQIVVELLMVVSIVLERNPELEFQDKVDLDK.
RetrocopyVAGRHLPQQPTLSDMTMYEMNFSFLVEDMLGNIDQPKYRQIVVELLMVVSIVLERNPELEFQDKVDLDKP
ParentalVKEAFHEFQKDESRLKEVEKQDDMTSFYNTPPLGKRGTCSYLTKVVMNLLLEGEVKPSNDDPCLVS
.KEAFHEFQKDES.LKE.EKQDDMTSFY.T.PLGKRGTCSYLTKVVMNLLLEGEVKPSNDDPCLVS
RetrocopyAKEAFHEFQKDESLLKEAEKQDDMTSFYSTRPLGKRGTCSYLTKVVMNLLLEGEVKPSNDDPCLVS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Tursiops truncatus was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_ttru_1037 retrocopy.

TSS - click to see more details

Tursiops truncatus was not studied using FANTOM5 data.

Lab - click to see more details

retro_ttru_1037 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species Parental gene accession Retrocopies number
Tursiops truncatus ENSTTRG00000010397 2 retrocopies
retro_ttru_1016, retro_ttru_1037 ,


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