RetrogeneDB ID: retro_ttru_1182

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_106530:10521..11124(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ABHD12B
• Ensembl ID: ENSTTRG00000001281
• Aliases: None
• Description: abhydrolase domain containing 12B [Source:HGNC Symbol;Acc:19837]

Sequence

>retro_ttru_1182
AGAAGAAAAACTTCCACTCTGTGTACCAGCTTTACAAGTAAATCATTAAAAGAACATATTTTCCCTCTTCTGATGAACAT
GCTGATTGTTTTCAACCTTTTCAGAGCACCATTTCTTGCGGATTTAAAGAAACCAGAGTTAAAGATTCCTCACACAGTGA
ACTTCTACATCAAAGTTGAACCTAGGGTGATTCTGGGTATCTGGCACACAGTTCCTAGCTGCCGGGGGGAGGATGCTAAG
CGGAAGGGCCGTAGCTGGTATGAAGCAGCTCTCCATGATGGCAACCCAATTATTGTTTATCTTCATGGAAGTGCAGAACA
CAGGACAGCTCCTCACAGACTTGAGATAGTAAAGGTGCTGAGTGATGGTGGTTTTCATGTCTCGTCTGTTGACTATAGAG
GGTTTGGGGACTCGACGGGTAAGCTGACGGAGGATGGGCTGACTTCAGATGCTATTTGTGTCTACGAGTGGACCAAGGCA
AGAAGTGGTACCACCCCCGTGTGTCTCTGGGGCCACTCTCTGGGAACAGGAGTTACAACAAATGCTGCAAAAGTTCTAGA
AGGGGAAGGATTCCCAGTTGATACTATTATCCTGGAAGCTCCA

Alignment

ORF - retro_ttru_1182 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.68 %
• Parental protein coverage: 58.09 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RRKIATLCDSFTTKSLNEHIFPPLMHMVIFFNFFKAPFLVDLKKPELKIPHTVSFYNKGEPRVILGTWHT
          RRK..TLC.SFT.KSL.EHIFP.LM.M.I.FN.F.APFL.DLKKPELKIPHTV.FY.K.EPRVILG.WHT
Retrocopy RRKTSTLCTSFTSKSLKEHIFPLLMNMLIVFNLFRAPFLADLKKPELKIPHTVNFYIKVEPRVILGIWHT

Parental  VSSCRWGEDAKGKGRSCYEAALHDGNPIIVYLHG-AEHKAAPHRLELVKVLSDSGFHVLSVDYGGFGDST
          V.SCR.GEDAK.KGRS.YEAALHDGNPIIVYLHG.AEH..APHRLE.VKVLSD.GFHV.SVDY.GFGDST
Retrocopy VPSCR-GEDAKRKGRSWYEAALHDGNPIIVYLHGSAEHRTAPHRLEIVKVLSDGGFHVSSVDYRGFGDST

Parental  GKPTEDGLSADAVCVYEWTEARNGTTPVCLWGHSLGTGVATNAAKVLEEKGFPVDAIILEAP
          GK.TEDGL..DA.CVYEWT.AR.GTTPVCLWGHSLGTGV.TNAAKVLE..GFPVD.IILEAP
Retrocopy GKLTEDGLTSDAICVYEWTKARSGTTPVCLWGHSLGTGVTTNAAKVLEGEGFPVDTIILEAP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1182 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1182 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tursiops truncatus	ENSTTRG00000001281	1 retrocopy	retro_ttru_1182 ,