RetrogeneDB ID: retro_ttru_1193

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_106871:51591..52392(+)
• Located in intron of: ENSTTRG00000016423

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZWINT
• Ensembl ID: ENSTTRG00000002204
• Aliases: None
• Description: ZW10 interacting kinetochore protein [Source:HGNC Symbol;Acc:13195]

Sequence

>retro_ttru_1193
GCCCTGGCCAAGGTGGCAGACATCCTGGAGCCTATAGGTCTTCAGAAGGAGGCAGAACTGCCCGTGCAGATCCTGGGTGA
GTTTGTGATGGACTCCCGGAAGAAAGACAAGCTCCTCTGCAGCCAGCTTCAAGTAGCAGCCTTCCCGTAGACTTTCTCGG
TTCAGGAAGGCACTGCCCAGGACCTGAACCCCTTGGCTTCTGAAGACACGAGCCGGCAGAAGGCAACTGAAGTCAAAGAG
CAATGGAAAGAGCTGAAGGCCACCTACCAAGAGCACGTGGAGGCCATCACAAGTTCCCTGACCCAGGCACTGCCCAAGGT
GGAGGAGGCCCAAAGGAAGCAGGCCAAGCTCCGGGAGGCCCTTGAACAACTCCAGGCCAAGAAGCAAATGGCCATGGAAA
AACTCAGAAGAGTCCAGAAGCAGTGGCAGCTACAACAGGAGAAGCGTCTGCAGCATCTGGCAGTGGTGTCTTCAGAGGTG
AGGGAGCGTCAGACAGGAACTCAGCAGGAGCTTGAACGGCTATATCAGGAACTTGGAACCCTGAAGCAGCAGGCAGGGCA
GGAGCAGTACAAGCTGCAGAGGCACCAGACCTTCCTCCACCTGCTACACACCCTTCAGGGTAAGCTGCTATTCCATGAGG
CTGAGGCAGAGATGCCACAAGAGTTGGATCTTCCTACGGATAAGCCCCAGCAGCTGACCCAGCCCCAGGAGCAGAACATT
CGGGACACCATGGGGAGAGGTGAATGTGTGTCCTCCAAGGCCAACAACCCACAGCCTGCTGGAGAGACAGGCTTACCATG
G

Alignment

ORF - retro_ttru_1193 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.01 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ALAKVADILEPLGLQEKAELPVQMLAEFVTDSRKKDKLLCSQLQVVDFLQNFLVQEGTAQDLNPLASEDT
          ALAKVADILEP.GLQ..AELPVQ.L.EFV.DSRKKDKLLCSQLQV..F...F.VQEGTAQDLNPLASEDT
Retrocopy ALAKVADILEPIGLQKEAELPVQILGEFVMDSRKKDKLLCSQLQVAAFP*TFSVQEGTAQDLNPLASEDT

Parental  SRQKAIEVKEQWKELKATYQEHVEAITSSLTQALPKVEEAQRKQAKLQEALEQLQAKKQMAMEKLRIVQK
          SRQKA.EVKEQWKELKATYQEHVEAITSSLTQALPKVEEAQRKQAKL.EALEQLQAKKQMAMEKLR.VQK
Retrocopy SRQKATEVKEQWKELKATYQEHVEAITSSLTQALPKVEEAQRKQAKLREALEQLQAKKQMAMEKLRRVQK

Parental  QWQLQQEKRLQHLAVVSSEVRERQTGTQQELEQLYQELGALKQQAGQEQYKLQRHQTFLHLLYTLQGKLL
          QWQLQQEKRLQHLAVVSSEVRERQTGTQQELE.LYQELG.LKQQAGQEQYKLQRHQTFLHLL.TLQGKLL
Retrocopy QWQLQQEKRLQHLAVVSSEVRERQTGTQQELERLYQELGTLKQQAGQEQYKLQRHQTFLHLLHTLQGKLL

Parental  FHEAEAEVPQELDLPKDKPQQQTQPQEQNIRDTMGRDECVSFKANNPQPAGDTGLPW
          FHEAEAE.PQELDLP.DKPQQ.TQPQEQNIRDTMGR.ECVS.KANNPQPAG.TGLPW
Retrocopy FHEAEAEMPQELDLPTDKPQQLTQPQEQNIRDTMGRGECVSSKANNPQPAGETGLPW

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1193 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1193 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000002655	1 retrocopy	retro_btau_239,
Echinops telfairi	ENSETEG00000007793	1 retrocopy	retro_etel_261,
Mus musculus	ENSMUSG00000019923	3 retrocopies	retro_mmus_1488, retro_mmus_2611, retro_mmus_997,
Rattus norvegicus	ENSRNOG00000048682	2 retrocopies	retro_rnor_1211, retro_rnor_1306,
Tarsius syrichta	ENSTSYG00000010283	1 retrocopy	retro_tsyr_1005,
Tursiops truncatus	ENSTTRG00000002204	1 retrocopy	retro_ttru_1193 ,