RetrogeneDB ID: retro_ttru_1261

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_108939:187704..188514(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RASSF6
• Ensembl ID: ENSTTRG00000006588
• Aliases: None
• Description: Ras association (RalGDS/AF-6) domain family member 6 [Source:HGNC Symbol;Acc:20796]

Sequence

>retro_ttru_1261
ATGCTGGACATTTTCTGGGGAGTAAAGCAGCCTATACAACTGAAAACACAAGATGAGAAGCAAATCCCTTCTTTCACTGT
GCTGAAGTCACCAGATGTCTTTTCCAAAAGGGGAACGACACGCTGGGGAGAATTTCATGATCTTTACTGTATTAGTGATT
TGGACAGGACTCAGATTCCAGTGTCTGGACCAACAGATTCCCAGGAAGATTATTTATCTTATCACAGTAGCACTCTGAAG
CTTCATGCAGATGAAGAACCTGAATCCCCATTGCTCTATAGAACCAAGAGTGGAGCAACCCTGGTGAGAAAAAGGATGAA
GCCTCCGATGATGGACAGAAAGGACAGACAGAAGCATAGGGCCTCTATGAACGGACACTTTTATAACCATGAAACATCAA
TTTTCACTCCAGCCATTGGATCAGAAACTAAGGTCAGAATAAACAGTGATATGAGAACTGAAGAAGTAATAAAGCAAATT
CTCCAAAAATTTAAGATTGAAAATAGTGCCCGGGATTTTGCACTTTACATTATTTTTGCGACAGGAGAGCAGAGACGGCT
AAAGAAAACAGACATTCCGCTACTGCATAGACGTCTACAGGCACCATCCAAAAAGAATGCTCTCATTTTCCTCATGAATA
AAGACGCAGAAGAAATTAGCAGTGATGTGGCTCAGTATATTAACTTTCATTTTTCTCTCCTGGAATCCATCCTTCAAAGA
TTAGATGAAGAAGAGAAAAGAGAGATTCAAAGAACAATAACAAAATTCAGTACAGAAAAGGCTATCATACTGAAATGTCT
TCAAAGTAAA

Alignment

ORF - retro_ttru_1261 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.74 %
• Parental protein coverage: 73.42 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MLDIFWGVKQPIQLKIQDEKQIPSFTVLKSPDVFSKR-MTRWGEFDDLYRISDLDRTQIPVSGATDTQED
          MLDIFWGVKQPIQLK.QDEKQIPSFTVLKSPDVFSKR..TRWGEF.DLY.ISDLDRTQIPVSG.TD.QED
Retrocopy MLDIFWGVKQPIQLKTQDEKQIPSFTVLKSPDVFSKRGTTRWGEFHDLYCISDLDRTQIPVSGPTDSQED

Parental  YLSYHSSTLKLHADEEPESPLLYRTMSEAALVRKRMKPPTIDRKDRQKHRASINGHFYNH-TSIFTPAFG
          YLSYHSSTLKLHADEEPESPLLYRT.S.A.LVRKRMKPP..DRKDRQKHRAS.NGHFYNH.TSIFTPA.G
Retrocopy YLSYHSSTLKLHADEEPESPLLYRTKSGATLVRKRMKPPMMDRKDRQKHRASMNGHFYNHETSIFTPAIG

Parental  SETKVRINSNMRTEEVIKQILQKFKIENSAQDFALYIIFATGEQRRLKKTDIPLLHRLLQGPSEKNARIF
          SETKVRINS.MRTEEVIKQILQKFKIENSA.DFALYIIFATGEQRRLKKTDIPLLHR.LQ.PS.KNA.IF
Retrocopy SETKVRINSDMRTEEVIKQILQKFKIENSARDFALYIIFATGEQRRLKKTDIPLLHRRLQAPSKKNALIF

Parental  LMDKDAEEINSDVAQYINFHFSLLESILQRLNEEEKREIQRTITKFSTEKAIILKCLRSK
          LM.KDAEEI.SDVAQYINFHFSLLESILQRL.EEEKREIQRTITKFSTEKAIILKCL.SK
Retrocopy LMNKDAEEISSDVAQYINFHFSLLESILQRLDEEEKREIQRTITKFSTEKAIILKCLQSK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1261 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1261 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tursiops truncatus	ENSTTRG00000006588	1 retrocopy	retro_ttru_1261 ,