RetrogeneDB ID: retro_ttru_1387

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_112029:101833..102366(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ELOVL2
• Ensembl ID: ENSTTRG00000003677
• Aliases: None
• Description: ELOVL fatty acid elongase 2 [Source:HGNC Symbol;Acc:14416]

Sequence

>retro_ttru_1387
ATGTTCTGTGAGTTAGTGACGGGAGTATGGGAGGGCCAGTACAACTTCTTCTGTCAGGGCACACGCAGTGGAGGAAAAGC
AGACATGAAGATCACCCGCGTGCTCTAGTGGTACTACTTCTCCAAGCTCATCGAGTTCATGGACACCTTCTTCATCTTGC
GCAAGAACCACCACCAGATCACAGTCCTGCACGTGTACCACCGCGCCTCCATGCTCAACATCTGGTGGTTCGTGATGAAC
TGGGTCCCCTGTGGCACTCTTATTTTGGTGCCACACTTAACAGCTTCATCCACGTCCACGTGTACTCGTACTACAGTCTG
TCGTCCGTCCCTTCCATGAGGCCGTACCTCTGGCGGAAGAAGTACATCACGCAGGGGCAGCTGCTTCAGTTTGTGCTGAC
CATCATCCAGACCGGCTGCAGGGTCATCTAGCCGCGCGCCTTCCCTCTTGGTTGGTTGTATTTACAGATTGGATACGTGA
TTTCTCTGGTTGCCCTCTTCACAAACTTCTATATTCAGACCTACAACAAGAAG

Alignment

ORF - retro_ttru_1387 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 60.56 %
• Parental protein coverage: 60.47 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MLAELILSSWEGGYNLQCQDLTSAGEADIRVAEVLWWYYFSKLIEFLDTIFFVLRKKTSQITFLHVYHHA
          M..EL....WEG.YN..CQ...S.G.AD.....VL.WYYFSKLIEF.DT.FF.LRK...QIT.LHVYH.A
Retrocopy MFCELVTGVWEGQYNFFCQGTRSGGKADMKITRVL*WYYFSKLIEFMDT-FFILRKNHHQITVLHVYHRA

Parental  SMFNIWWCVLNWIPCG-QSFFGPTLNSFIHILMYTYYGLSVFPSMRKYLWWKKYLTQAQLVQFVLTVTHT
          SM.NIWW.V.NW.PCG..S.FG.TLNSFIH...Y.YY.LS..PSMR.YLW.KKY.TQ.QL.QFVLT...T
Retrocopy SMLNIWWFVMNWVPCG<HSYFGATLNSFIHVHVYSYYSLSSVPSMRPYLWRKKYITQGQLLQFVLTIIQT

Parental  MSAVVRPCGFPFGCLIFQSSYMLTLVILFLNFYVQTYRKK
          ...V..P..FP.G.L..Q..Y...LV.LF.NFY.QTY.KK
Retrocopy GCRVI*PRAFPLGWLYLQIGYVISLVALFTNFYIQTYNKK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1387 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1387 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tursiops truncatus	ENSTTRG00000003677	1 retrocopy	retro_ttru_1387 ,