RetrogeneDB ID: retro_ttru_1501

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_114731:138546..138951(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: LGALS1
• Ensembl ID: ENSTTRG00000004798
• Aliases: None
• Description: lectin, galactoside-binding, soluble, 1 [Source:HGNC Symbol;Acc:6561]

Sequence

>retro_ttru_1501
ATGGCTTGTGGTGTTGTCATCAGCAACCTGAATCTCAAACCTGGGAAGTGCCTCAGAGTGTTGGGCAAGGTGGCCCTGGA
TGCCAAGAGCTTTGTGCTGAACCTGGGCAAAGATGGCAACAACCTGTGCCTGCACTTCAACCCCTGCTTCAATGAGCACG
GGGACACCAACACCATCGTGTGTAACAGCAAGGATGGCGGGGCCTGGGGGGCTGAGAAGCAGGAGTCTGTCTTCCCCTTT
CAGCCTGGAAGTGTTGTGGAGGTATGCATCTGCTTCGACCAGGCAGAGCTAACCATCCAGCTGCCTGGTGGATACAAATT
CAAATTCCCCAACTGCCTCAACCTGGAGGCCATCAACTACCTGGCAGCCAATGGCGACTTCAAGATCAAGTGCACGGCCC
TTGAG

Alignment

ORF - retro_ttru_1501 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.19 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MACGLVASNLNLKPGECLRVRGEVPPDAKSFVLNMGKDGNNLCLHFNPRFDAHGDTNTIVCNSKDGGAWG
          MACG.V.SNLNLKPG.CLRV.G.V..DAKSFVLN.GKDGNNLCLHFNP.F..HGDTNTIVCNSKDGGAWG
Retrocopy MACGVVISNLNLKPGKCLRVLGKVALDAKSFVLNLGKDGNNLCLHFNPCFNEHGDTNTIVCNSKDGGAWG

Parental  AEQRESVFPFQPGSVVEVCISFDQADLTIQLPGGYDFKFPNRLNLEAINYLAADGDFKIKCVAFE
          AE..ESVFPFQPGSVVEVCI.FDQA.LTIQLPGGY.FKFPN.LNLEAINYLAA.GDFKIKC.A.E
Retrocopy AEKQESVFPFQPGSVVEVCICFDQAELTIQLPGGYKFKFPNCLNLEAINYLAANGDFKIKCTALE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1501 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1501 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 3 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000001487	1 retrocopy	retro_cfam_141,
Otolemur garnettii	ENSOGAG00000006935	5 retrocopies	retro_ogar_11, retro_ogar_1178, retro_ogar_2084, retro_ogar_467, retro_ogar_64,
Tursiops truncatus	ENSTTRG00000004798	1 retrocopy	retro_ttru_1501 ,