RetrogeneDB ID: retro_ttru_1606

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_57912:0..1183(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZCCHC7
• Ensembl ID: ENSTTRG00000006054
• Aliases: None
• Description: zinc finger, CCHC domain containing 7 [Source:HGNC Symbol;Acc:26209]

Sequence

>retro_ttru_1606
TCAGATGGGTCAGAGGTCATCACACTGTCTGATGAAGATAGTATTTATAAATGTAAAAGAAAGAATTTTAGAGTCCATGC
AGAAGAAAGGACCCAAGGTCCTCTGCTTTTCTTCATTCTAATGAGTTGGCAGATAAGAAATGCAAGAGGGATATTGAGAA
GACTAAACCTGGAGAGAGATCAGGTACAATCCAAGAGGTCATGATTATAGAGGTCAGTTCAAGTGAAGAGGAAGAGAGCA
CCATTTCAGAAAGCGATAATGTGGAAAGCTGGATGCTGCTGGGATGTGAAGTTGATGATAAAGATGACGATATCCTTCTC
AATCTTGTGGGGTGTGAAAATTCTCTTAATGAAGGAGAAGATGGTGTAAACTGGTTCATCAGTGACAAAGACATTGAGGC
ACAGATAGGTAAAAAAAGAACATCTGGAAGATGGACCCACCGATACTATTCAGTCAACAAAAACGTTACCTGTAGAAATT
GTGACAAATGTGGCCATTTGTCAAAAAACTGCCCCTTTCCACAAAAAGTCCGCTCCTGTTGCCTCTGCTCCGAGAGAGGA
CACCTCCAGTATGCCTGTCCGGCCCGCTTTTGCTTAGACTGTTCTTTGCCTATGTCTTTTACTCACAGATGTCTTGAAAG
ACCTTCCTGGAGAAAACGGTGTGACAGATGTGACATGATAGGCCACTATGCTGATGCTTGCCCAGAAATCTGGAGGCAGT
ATCACCTAACGACCAAACCTGGACCACCCAAAAAGCCAAAGACCCCTTCTGGAAAATCAGCCTTAGTGTATTGCTACAAC
TGCGGGCAAGAAGGCCATTACGGACATGAATGTACAGAAAGACGAATGTTTAGCCAGACCTTTCCAACATCTCCATTCAT
CTACTACTATGATGACAAATATGAAATCCGGGAGAGAGATCAGAGAATAAAACGAAAAGTGAAAGAACTTCAGAAGAATG
GGGACTTTCCAAGGCAGTTCAAGAGGCCTCATATGGAAGCAGCAGATAAGAGGCCCCACCGTGATATGAGGAAGAGCCAT
GCCTCATGGAGAAGTAACACGTGGTCTCAAGAAAAGAAGAAACCCAAAAGAAGTCATGAACAGGACCAGCAGAGAGCGTG
AGAGCACAGAGCTGACAGTGTCATGAAGTGGATGAGGACTACCCAGGGCCCAAAGTCCACTTT

Alignment

ORF - retro_ttru_1606 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.8 %
• Parental protein coverage: 73.01 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  SDGSEVITLSDEDSIYKCKRKNFRVHAEERTQGP-PAFLHSNELADKKCKRDIEKTKPGERSGTIQEVMI
          SDGSEVITLSDEDSIYKCKRKNFRVHAEERTQGP..AFLHSNELADKKCKRDIEKTKPGERSGTIQEVMI
Retrocopy SDGSEVITLSDEDSIYKCKRKNFRVHAEERTQGP<SAFLHSNELADKKCKRDIEKTKPGERSGTIQEVMI

Parental  IEVSSSEEEESTISESDNVESWMLLGCEVDDKDDDILLNLVGCENSLNEGEDGVNWFISDKDIEAQIGKK
          IEVSSSEEEESTISESDNVESWMLLGCEVDDKDDDILLNLVGCENSLNEGEDGVNWFISDKDIEAQIGKK
Retrocopy IEVSSSEEEESTISESDNVESWMLLGCEVDDKDDDILLNLVGCENSLNEGEDGVNWFISDKDIEAQIGKK

Parental  RTSGRWTHRYYSVNKNVTCRNCDKCGHLSKNCP---KVRSCCLCSERGHLQYACPARFCLDCSLPMSSTH
          RTSGRWTHRYYSVNKNVTCRNCDKCGHLSKNCP...KVRSCCLCSERGHLQYACPARFCLDCSLPMS.TH
Retrocopy RTSGRWTHRYYSVNKNVTCRNCDKCGHLSKNCPFPQKVRSCCLCSERGHLQYACPARFCLDCSLPMSFTH

Parental  RCLERPSWRKRCDRCDMIGHYADXXXXXXXXXXXXTKPGPPKKPKTPSGQSALVYCYNCGQEGHYGHECT
          RCLERPSWRKRCDRCDMIGHYAD............TKPGPPKKPKTPSG.SALVYCYNCGQEGHYGHECT
Retrocopy RCLERPSWRKRCDRCDMIGHYADACPEIWRQYHLTTKPGPPKKPKTPSGKSALVYCYNCGQEGHYGHECT

Parental  ERRMFSQTFPTSPFIYYYDDKYEIRERDQRIKRKVKELQKNGDFPRQFKRPHMEAADKRPHRDMRKSHAS
          ERRMFSQTFPTSPFIYYYDDKYEIRERDQRIKRKVKELQKNGDFPRQFKRPHMEAADKRPHRDMRKSHAS
Retrocopy ERRMFSQTFPTSPFIYYYDDKYEIRERDQRIKRKVKELQKNGDFPRQFKRPHMEAADKRPHRDMRKSHAS

Parental  WRSNTWPQEKK-ETQ-KEAMNRTSRERE-KHRKAD-KCHEVDEDYPRGPKVHF
          WRSNTW.QEKK.ETQ.KE.MNRTSRERE..HR.AD..CHEVDEDYP.GPKVHF
Retrocopy WRSNTWSQEKK<ETQ<KEVMNRTSRERE<EHR-AD<QCHEVDEDYP-GPKVHF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1606 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1606 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 5 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000147905	1 retrocopy	retro_hsap_1342,
Macaca mulatta	ENSMMUG00000007421	1 retrocopy	retro_mmul_2180,
Pongo abelii	ENSPPYG00000029763	1 retrocopy	retro_pabe_1114,
Pan troglodytes	ENSPTRG00000020939	2 retrocopies	retro_ptro_2962, retro_ptro_917,
Tursiops truncatus	ENSTTRG00000006054	2 retrocopies	retro_ttru_1606 , retro_ttru_505,