RetrogeneDB ID: retro_ttru_1676

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_85051:26892..27201(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSTTRG00000000251
• Aliases: None
• Description: None

Sequence

>retro_ttru_1676
ATGCCGCCCTCACGAGGACTGCTGTGGCTCCAGGTGCTGTGTGCAGGCCCTCTCCATACAGAGGCTGTGGTGCTTTGGGT
TCCTCCTGATGATGGGCGTGCTCTTCTGCTGTGGTGCCGGCTTCTTCATCTGGAGGTGCATGTACCCCACGCCGCTGATC
GAGGAGCTGGCATTCAACGTGTCTTACACCAGGCAGCCCCCGAACCCCACTCCAGGAGCCCAGAAGCTGGGGCTGCCGTT
TTACACTGACCCTGGAGGACCAGGGATGAATCCTGCTGGGAACCCTGTGGCGATGGCTTTCCAGGTCCA

Alignment

ORF - retro_ttru_1676 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.64 %
• Parental protein coverage: 99. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MPPLRGLLWFQVLCAGPLHPEALVFLVPPDDGRALLLWSRLLHPEAHVPPAADRGAGVQRVLHQAAPEPH
          MPP.RGLLW.QVLCAGPLH.EA.V..VPPDDGRALLLW.RLLH.E.HVP.AADRGAG.QRVLHQAAPEPH
Retrocopy MPPSRGLLWLQVLCAGPLHTEAVVLWVPPDDGRALLLWCRLLHLEVHVPHAADRGAGIQRVLHQAAPEPH

Parental  SRSPAAGAAVLH-RSRTR-VSCW--LCDAFPGP
          SRSP.AGAAVLH...RTR..SCW....D.FPGP
Retrocopy SRSPEAGAAVLH*PWRTRDESCWEPCGDGFPGP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1676 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1676 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tursiops truncatus	ENSTTRG00000000251	1 retrocopy	retro_ttru_1676 ,