RetrogeneDB ID: retro_ttru_173

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_1487:259040..260441(+)
• Located in intron of: ENSTTRG00000007104

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MSN
• Ensembl ID: ENSTTRG00000002946
• Aliases: None
• Description: moesin [Source:HGNC Symbol;Acc:7373]

Sequence

>retro_ttru_173
CCCAAGACGTTCACAGTGCGGATCGTCACCATGGACGCGGAGATGGAGTTCAATTGCGAGATGAAGTGGAAGGGGAAGGA
CCTGTTTGACTTGGTGTGCCGGACCCTGGGGCTTCGGGAAACCTGGTTCTTTGGCCTGCAGTATACAATCAAGGACACCG
TGGCCTGGCTCAAGATGGACAAGAAGGTGCTGGATCATGACGTTTCAAAGGAAGAGCCAGTCACCTTTCACTTCCTGGCC
AAATTTTATCCTGAGAATGCTGAGGAGGAGCTGGTTCAGGAGATCACGCAACATTTATTCTTCTTGCAGGTAAAGAAGCA
GATTTTAGATGAAAAGATCTACTGCCCTCCCGAGGCTTCTGTGCTCCTGGCTTCTTATGCCGTCCAGGCCAAGTATGGTG
ACTACGACCCCTCTGTTCACAAGCGGGGATTTTTGGCCCAAGAGGAATTGCTTCCAAAAAGGGTAATAAATCTGTATCAA
ATGACTCCAGAAATGTGGGAGGAAAGAATCACAGCCTGGTACGCAGAGCACCGAGGCCGAGCCAGGGACGAAGCTGAAAT
GGAATATTTGAAGATAGCTCAGGACCTGGAGATGTACGGTGTGAACTACTTTACAATCCGGAATAAAAAGGGCACAGAGC
TGCTGCTCGGAGTGGATGCTTTGGGGCTTCACATTTATGACCCTGAGAACAGGCTGACCCCCAAGATCTCCTTCCCGTGG
AACGAAATCCGAAACATCTCGTACAGCGACAAGGAGTTTACTATTAAGCCATTGGATAAGAAAATTGATGTCTTCAAATT
TAACTCCTCAAAGCTTCGTGTTAATAAGCTGATTCTCCAGCTGTGTATCGGGAACCACGACCTGTTTATGAGGAGGAGGA
AGGCTGATTCTTTGGAAGTTCAGCAGATGAAAGCTCAGGCCAGGGAGGAGAAGGCCAGAAAGCAGATGGAGAGGCAGCGC
CTCGCTCGAGAGAAGCAGATGAGGGAGGAGGCTGAACGCACGAGGGACGAACTGGAGAGGAGGCTGCTGCAGATGAAGGA
AGAGGCGACGATGGCCAACGAAGCCCTGATGCGGTCCGAGGAGACAGCCGACCTGTTGGCCGAAAAGGCCCAAATCACTG
AGGAGGAGGCAAAGCTCCTGGCACAGAAGGCGGCAGAGGCCGAACAGGAGATGCAGCGCATCAAGGCCACGGCCATCCGG
ACGGAGGAAGAGAAGCGCCTTATGGAGCAGAAGGTGCTGGAGGCCGAAGTGCTGGCGCTGAAGATGGCTGAGGAGTCCGA
GAGGAGGGCCAAGGAGGCAGATCAGCTAAAGCAGGACCTGCAGGAAGCCCGCGAGGCAGAGCGAAGAGCCAAGCAGAAGC
TCCTGGAAATCACCACCAAGCCCACATACCCGCCTATGAAC

Alignment

ORF - retro_ttru_173 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 51.47 %
• Parental protein coverage: 82.64 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PKTINVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVR
          PKT..VR..TMDAE.EF.......GK.LFD.V..T.GLRE.WFFGLQY...K....WLK..KKV...DV.
Retrocopy PKTFTVRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYT-IKDTVAWLKMDKKVLDHDVS

Parental  KESPLLFKFRAKFYPEDVSEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQSKYGDFNKEV
          KE.P..F.F.AKFYPE...EEL.Q.ITQ.LFFLQVK..IL...IYCPPE..VLLASYAVQ.KYGD....V
Retrocopy KEEPVTFHFLAKFYPENAEEELVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKYGDYDPSV

Parental  HKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDLEMYGVNYFSIKNK
          HK.G.LA...LLP.RV..........WEERI..W..EHRG..R..A..EYLKIAQDLEMYGVNYF.I.NK
Retrocopy HKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFTIRNK

Parental  KGSELWLGVDALGLNIYEQNDRLTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRIL
          KG.EL.LGVDALGL.IY....RLTPKI.FPW.EIRNIS..DK.F.IKP.DKK...F.F....LR.NK.IL
Retrocopy KGTELLLGVDALGLHIYDPENRLTPKISFPWNEIRNISYSDKEFTIKPLDKKIDVFKFNSSKLRVNKLIL

Parental  ALCMGNHELYMRRRKPDTIEVQQMKAQAREEKHQKQMERALLENEKKKREMAEKEKEKIEREKEELMERL
          .LC.GNH.L.MRRRK.D..EVQQMKAQAREEK..KQMER..L..EK..RE.AE......ER......E..
Retrocopy QLCIGNHDLFMRRRKADSLEVQQMKAQAREEKARKQMERQRLAREKQMREEAERTRDELERRLLQMKEEA

Parental  KQIEEQTKKAQQELEEQTRRALELEQERKRAQSEAEKLAKERQEAEEAKEALLQASRDQKKTQEQLALEM
          ....E...............A...E.E.K.....A.K.A...QE....K..........K...EQ..LE.
Retrocopy TMANEALMRSEETADLLAEKAQITEEEAKLL---AQKAAEAEQEMQRIKATAIR-TEEEKRLMEQKVLEA

Parental  AELTSRISQLEMARQKKESEAVEWQQKAQMVQEDEKTRAELKTAMSTPHVAEPAEN
          ..L.......E..R..KE.......Q..Q...E.E..RA..K....T.....P..N
Retrocopy EVLALKMAE-ESERRAKEAD--QLKQDLQEAREAER-RAKQKLLEITTKPTYPPMN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_173 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_173 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000147065	1 retrocopy	retro_hsap_3153,
Gorilla gorilla	ENSGGOG00000001823	1 retrocopy	retro_ggor_1359,
Macropus eugenii	ENSMEUG00000015240	1 retrocopy	retro_meug_1267,
Oryctolagus cuniculus	ENSOCUG00000000149	1 retrocopy	retro_ocun_1173,
Pongo abelii	ENSPPYG00000020419	1 retrocopy	retro_pabe_2623,
Tursiops truncatus	ENSTTRG00000002946	1 retrocopy	retro_ttru_173 ,