RetrogeneDB ID: | retro_ttru_1759 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | scaffold_90628:127430..128022(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COMMD2 | ||
Ensembl ID: | ENSTTRG00000003450 | ||
Aliases: | None | ||
Description: | COMM domain containing 2 [Source:HGNC Symbol;Acc:24993] |
Percent Identity: | 74.5 % |
Parental protein coverage: | 98.99 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | LNLSKEHKEHLALPAQVNSAVVLEFGRIAVKFLRRASNPKIYXXXXXKLSVSSDTVQHGVE-GLIHLLTE |
L.LS.EHKEHLA...QV.S.VV.EFGRI.V.F.R..SNPKIY.....KLSVSSDTVQHGVE..LI.LL.. | |
Retrocopy | LVLSEEHKEHLAFLPQVDSTVVSEFGRIVVEFPR*GSNPKIYEGAARKLSVSSDTVQHGVE>NLIYLLH* |
Parental | SSKLMISELDFQDSVFVLGFSEELNKLLLQLYLDNRKEIRTILSELAPDLPSYHS-LEWRLDVQLASRSL |
..K...........VFVL..SEELNKLLLQL.LDNRKEIRTILSE.APDLPSYHS.LEWRLDVQLASRSL | |
Retrocopy | KFKAL*FLNWISKTVFVL*SSEELNKLLLQLFLDNRKEIRTILSESAPDLPSYHS>LEWRLDVQLASRSL |
Parental | RQQMKPSVTIKLHLNQ-NGDHNTQVLQTDPATLLHLVQQLEQALEEMKTNHCRRVVRNIK |
RQQ.KP.VTIKLHLN..NG.HNTQVLQT.PATLLHLVQQLEQAL.EMKT.H.RR.VRNIK | |
Retrocopy | RQQIKPTVTIKLHLNR<NGGHNTQVLQTHPATLLHLVQQLEQALKEMKTDHRRRAVRNIK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013809 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000005273 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000043386 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000010888 | 4 retrocopies | |
Tupaia belangeri | ENSTBEG00000003545 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000003450 | 1 retrocopy |
retro_ttru_1759 ,
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