RetrogeneDB ID: retro_ttru_192

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_1522:186138..186816(+)
• Located in intron of: ENSTTRG00000014908

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: KCTD10
• Ensembl ID: ENSTTRG00000006406
• Aliases: None
• Description: potassium channel tetramerization domain containing 10 [Source:HGNC Symbol;Acc:23236]

Sequence

>retro_ttru_192
TGGATCCTCATTGACGAGTGTGAGAAGCTCTATGGTACGATACTCAATTACCTTTGTGACGGGGCGGTCCCCTTGCCCGA
GAGCCACCGGGAGACTGAGGAGCTGCAGGAAGAAGCCAAGTACTATCTGGTCCAGGGCCTGGTGGAAGAGTTCCAGGCAG
CCCTGCAAAACAAAGATACTTATGAGCCTTTCTGCAGAGTTCCTGTTATCACCTCATCCAAGGAAGAACAGAAACTTATA
GTGACTTCAAATAAGCCAGCCGTGAAGTTGCCCTACAACAGAAGTAACAACAAATACTCGTATACCAGCAATTCTGACGA
CAATATGTTGAAGAACATCGAACTGTTTGAAAAGCTGTCTCTGTGCTTTGATGGAAGGGTCCTGTTCATAAAGGATGTCA
TTGGGGATGAAATCTGCTGCTGGTCCTTCTACAGCCAGGGCCACAAGATCGCTGAAGTCTGCTGTACCTCTATCGTCTAC
ACCACGGAGAAGAAACAGACCAAGGTGGAGTTCCCCGAAGCCCGGATCTATGAGGAGACCCTGAATATTTTGCTGTATGA
GGCCCAGGATGACCGGGGACCTGACAGCGCGCTTCTGGAGGCCACAGGTGGGGTGGCCGGTTGCTCCCACCACCTGGACG
AGGATGACGAGCGGGAGCGGATCTACATTGCCCACATC

Alignment

ORF - retro_ttru_192 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.17 %
• Parental protein coverage: 71.97 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  WILIDRCGKHFGTILNYLRDGAVPLPESRREIEELLAEAKYYLVQGLVEECQAALQNKDTYEPFCKVPVI
          WILID.C.K..GTILNYL.DGAVPLPES.RE.EEL..EAKYYLVQGLVEE.QAALQNKDTYEPFC.VPVI
Retrocopy WILIDECEKLYGTILNYLCDGAVPLPESHRETEELQEEAKYYLVQGLVEEFQAALQNKDTYEPFCRVPVI

Parental  TSSKEEQKLIATSNKPAVKLLYNRSNNKYSYTSNSDDNMLKNIELFDKLSLRFNGRVLFIKDVIGDEICC
          TSSKEEQKLI.TSNKPAVKL.YNRSNNKYSYTSNSDDNMLKNIELF.KLSL.F.GRVLFIKDVIGDEICC
Retrocopy TSSKEEQKLIVTSNKPAVKLPYNRSNNKYSYTSNSDDNMLKNIELFEKLSLCFDGRVLFIKDVIGDEICC

Parental  WSFYGQGRKIAEVCCTSIVYATEKKQTKVEFPEARIYEETLNILLYEAQDGRGPDNALLEATGGAAGRSH
          WSFY.QG.KIAEVCCTSIVY.TEKKQTKVEFPEARIYEETLNILLYEAQD.RGPD.ALLEATGG.AG.SH
Retrocopy WSFYSQGHKIAEVCCTSIVYTTEKKQTKVEFPEARIYEETLNILLYEAQDDRGPDSALLEATGGVAGCSH

Parental  HLDEDEERERERIERV
          HLDED.ERER..I...
Retrocopy HLDEDDERERIYIAHI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_192 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_192 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000007621	1 retrocopy	retro_dnov_515,
Sus scrofa	ENSSSCG00000009934	1 retrocopy	retro_sscr_806,
Tursiops truncatus	ENSTTRG00000006406	1 retrocopy	retro_ttru_192 ,