RetrogeneDB ID: retro_ttru_245

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_168:131270..131699(-)
• Located in intron of: ENSTTRG00000015550

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FAM210A
• Ensembl ID: ENSTTRG00000007425
• Aliases: None
• Description: family with sequence similarity 210, member A [Source:HGNC Symbol;Acc:28346]

Sequence

>retro_ttru_245
TTTAGATAATATGGGAAAGTTTTGATTCCAGTGCATCTAATAACTTCCGGTGTTTGGTTTGGAATGTTTTATTATGCAGC
CATAAAAGGAGTGAATGTCGTTCCTTTTCTAGAACTTACTGGGTTACCTGACAGCGTAGTAAACATTCTGAAAAATTCCC
AGAGTGGAAATGCACTAACAGCATATGCCCTGTTGAAGATTGCAATGCATACGCAGTACACTGTGACCCTGGGGGGGACC
TCCTTCACTGTGAAGTATCTGCGCAGCCACGGCTACATGTCGACGCCACCTCCTGTGAAGGAGTATCCGCAAGACAGGAT
GGAGGAGACAAAAGAGCTCCTCACAGAGAAGCTGGAGGAGACAAAGGACAGGCTCAGTGAAAAACTGCAAGAGACCAAAG
GAAAGGCTTCTTTTAAGAAAAAAGTGGAA

Alignment

ORF - retro_ttru_245 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.91 %
• Parental protein coverage: 52.57 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  FRQYGKVLIPVHLITSGVWFGTFYYAAIKGVNVVPFLELIGLPDSVVNILKNSQSGNALTAYALFKIATP
          FR.YGKVLIPVHLITSGVWFG.FYYAAIKGVNVVPFLEL.GLPDSVVNILKNSQSGNALTAYAL.KIA..
Retrocopy FR*YGKVLIPVHLITSGVWFGMFYYAAIKGVNVVPFLELTGLPDSVVNILKNSQSGNALTAYALLKIAMH

Parental  ARYTVTLGGTSFTVKYLRSRGYMSTPPPVKEYLQDRMEETKELLTEKMEETKDRLTEKLQETKGKVSFKK
          ..YTVTLGGTSFTVKYLRS.GYMSTPPPVKEY.QDRMEETKELLTEK.EETKDRL.EKLQETKGK.SFKK
Retrocopy TQYTVTLGGTSFTVKYLRSHGYMSTPPPVKEYPQDRMEETKELLTEKLEETKDRLSEKLQETKGKASFKK

Parental  KVE
          KVE
Retrocopy KVE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_245 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_245 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000007826	1 retrocopy	retro_etel_244,
Macaca mulatta	ENSMMUG00000011961	1 retrocopy	retro_mmul_39,
Ictidomys tridecemlineatus	ENSSTOG00000019999	1 retrocopy	retro_itri_915,
Tursiops truncatus	ENSTTRG00000007425	1 retrocopy	retro_ttru_245 ,