RetrogeneDB ID: retro_ttru_25

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_70285:2..962(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSTTRG00000013639
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSTTRG00000016915
• Aliases: None
• Description: None

Sequence

>retro_ttru_25
TTTGAAGATTATCCAATGAGAGTTTTACATGACCTTCATTCAGAAGTCCGGACTCTAAAGGATGATGTCAATATTCTTCT
TGATGAAGCAAGCCTGGAAAGTCAAGAAAGCATTGGTTTCATAAAGGCAACAAAAGTACTGATGAAAAAAAATTCAATGG
ATATCATGAAAATTAGAGAGTTTTTCCAGAAGTACGGATATAATCCACGTGCCAAGGAAAATTCAGGGGATGAGCAAGAA
GTCATTGACTCTAAACCAGAGAACAATAAACGTGAAAATCCTGAGAAGCCTGATGTGAAGGGTGATTTGTCGGATTCCGC
TCCTCCAAGCAGTTCTGTTTCTGAGAAGCCTCCACGTAGTCCACAACTTTCCGATTTTGGACTTGAGCGGTACATGATAT
CCCAAGTTCTGCCAAACCCTCCCCAGGCAGTAAACAACGAGAAGGAAGAGCCAAAAATTTTAACTCCATTTTCCAAACGG
CCACTAGTAAAAACTCCCAAATGTGCACTAAAGATGGATGATTTTGAGTGTGTGACTCCTAAATTAGAACACTTTGGTAT
CTCTGAATATACTGTGTGTTTAAATGAAGATTATACAATGGGACTCAAAAATGTGAAGAATAACAGTGAGGAGGCCATAG
AAACAGAACCAGTGACCAACAATAATTTCTTTGCCACTCCTGGCCCCATAACCCAGCCATTGGAAAAAAATGATGCCGAG
CATACACATTCTCCTGTGGCACCTACATTCTGCACTCCTGGTTTGAAAATCCCTTCTACAAAGAACAGCACAGCTTTGGT
ATCCACAAATTATCCATTATCAAAAACAAATAGTTCATCAAATGACTTGGAAATGAAAGACAGTACATCGTTAGTTTTAA
ATTCAGACGAGTGCTTTGAGAATTTTGCGGATCCCTCTTCTCCTACGATTTCTTCCTATGAGAATCTGCTCAGAACACCT

Alignment

ORF - retro_ttru_25 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 100. %
• Parental protein coverage: 59.51 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DEQEVIDSKPENNKRENPEKPDVKGDLSDSAPPSSSVSEKPPRSPQLSDFGLERYMISQVLPNPPQAVNN
          DEQEVIDSKPENNKRENPEKPDVKGDLSDSAPPSSSVSEKPPRSPQLSDFGLERYMISQVLPNPPQAVNN
Retrocopy DEQEVIDSKPENNKRENPEKPDVKGDLSDSAPPSSSVSEKPPRSPQLSDFGLERYMISQVLPNPPQAVNN

Parental  EKEEPKILTPFSKRPLVKTPKCALKMDDFECVTPKLEHFGISEYTVCLNEDYTMGLKNVKNNSEEAIETE
          EKEEPKILTPFSKRPLVKTPKCALKMDDFECVTPKLEHFGISEYTVCLNEDYTMGLKNVKNNSEEAIETE
Retrocopy EKEEPKILTPFSKRPLVKTPKCALKMDDFECVTPKLEHFGISEYTVCLNEDYTMGLKNVKNNSEEAIETE

Parental  PVTNNNFFATPGPITQPLEKNDAEHTHSPVAPTFCTPGLKIPSTKNSTALVSTNYPLSKTNSSSNDLEMK
          PVTNNNFFATPGPITQPLEKNDAEHTHSPVAPTFCTPGLKIPSTKNSTALVSTNYPLSKTNSSSNDLEMK
Retrocopy PVTNNNFFATPGPITQPLEKNDAEHTHSPVAPTFCTPGLKIPSTKNSTALVSTNYPLSKTNSSSNDLEMK

Parental  DSTSLVLNSDECFENFADPSSPTISSYENLLRTP
          DSTSLVLNSDECFENFADPSSPTISSYENLLRTP
Retrocopy DSTSLVLNSDECFENFADPSSPTISSYENLLRTP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_25 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_25 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000003314	1 retrocopy	retro_btau_796,
Choloepus hoffmanni	ENSCHOG00000003518	1 retrocopy	retro_chof_1706,
Tursiops truncatus	ENSTTRG00000016915	1 retrocopy	retro_ttru_25 ,