RetrogeneDB ID: retro_ttru_305

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_1817:253820..254493(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ADPRHL2
• Ensembl ID: ENSTTRG00000015096
• Aliases: None
• Description: ADP-ribosylhydrolase like 2 [Source:HGNC Symbol;Acc:21304]

Sequence

>retro_ttru_305
CGCTCCCTCTGCCGCTTCCGAGGCTGCCTGGCGGGCGCGCTGCTCGGGGACTGCGTGGGCGTGGGCGCCGTCGACGAGGC
GCGCAACACCGCCGACCTGACTTCAGTCTCGCGTCAGGTCCAGGATCTGGAGCCGGACCCCGGCTTGTCGGGGAGCGCGC
GGCCAGAAGCACTCTGCTACACCGACGACACGGCCGGCCGGGGCCAGGCGCTGGTGCAGTCTCTGCTGGCCAAGGGGGCC
TTCGACGAGGTGGACACGGCTCACCGGTTTGCTCAGGAGTACAAGAAAGACCCTGACGGGGTTATGGTGCTGGAGTGATC
ACCGTCTTCAGGAAGCTCCTGAGCCCCGAGTGCCGTGATGGCTGTGAGCCGTCCCGGCCCAGTTTAATGGCAAAGGCTCC
AACGGCAACGGGGGCGCCATGCGGGGGTCCGGCATCTCCCCGGCCTATAACAGCGTCCAGGATGTGCAGAAGTTTGCCCG
GCTCTCGGCCCAGCTGACACACGCCTCCTCCCTGGGTTACAAGGGTGCCATCCTGCAGGCCCTGGCTGCGCACCTGGCTT
TGCAGGGTGAGTCGTCCAGTGAGCACTTCCTTGAACAACTCCTGGCACGTATGGAGGAGCTGGACAGTGACACCCAAGAA
GTGTCAGGTGCCCGGGAGTTGGGCATGGAGGAG

Alignment

ORF - retro_ttru_305 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.26 %
• Parental protein coverage: 60.82 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  RSLSRFRGCLAGALLGDCVG--AVYEARDTVDLTSVLRRVQDLEPDPGSPGSTRTEALCYTDDTA-MARA
          RSL.RFRGCLAGALLGDCVG..AV.EAR.T.DLTSV.R.VQDLEPDPG..GS.R.EALCYTDDTA....A
Retrocopy RSLCRFRGCLAGALLGDCVGVGAVDEARNTADLTSVSRQVQDLEPDPGLSGSARPEALCYTDDTAGRGQA

Parental  LVQSLLAKEAFDEMDMAHRFAQEYKKDPD-RGYGAGVITVFRKLLSPKCRDVFEPAR-AQFNGKGSYGNG
          LVQSLLAK.AFDE.D.AHRFAQEYKKDPD.RGYGAGVITVFRKLLSP.CRD..EP.R.AQFNGKGS.GNG
Retrocopy LVQSLLAKGAFDEVDTAHRFAQEYKKDPD<RGYGAGVITVFRKLLSPECRDGCEPSR<AQFNGKGSNGNG

Parental  GAMRVAGISLAYSSVQDVQKFARLSAQLTHASSLGYNGAILQALAVHLALQGESSSEHFLEQLLGHMEEL
          GAMR..GIS.AY.SVQDVQKFARLSAQLTHASSLGY.GAILQALA.HLALQGESSSEHFLEQLL..MEEL
Retrocopy GAMRGSGISPAYNSVQDVQKFARLSAQLTHASSLGYKGAILQALAAHLALQGESSSEHFLEQLLARMEEL

Parental  ESDAQSVSDARELGMEE
          .SD.Q.VS.ARELGMEE
Retrocopy DSDTQEVSGARELGMEE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_305 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_305 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tursiops truncatus	ENSTTRG00000015096	1 retrocopy	retro_ttru_305 ,