RetrogeneDB ID: retro_ttru_314

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_1836:285933..286557(-)
• Located in intron of: ENSTTRG00000002009

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: EMD
• Ensembl ID: ENSTTRG00000013924
• Aliases: None
• Description: emerin [Source:HGNC Symbol;Acc:3331]

Sequence

>retro_ttru_314
ATGGACGACTACGCGGCCCTGTCAGACACCGAGCTGGCTGCCTTGCTGCGCCAGTACAACATCCCACACGGGCCCATCGT
CGGTTCCAATCGGAAGTTCTACGAAAAGAAAATCTTCGAGTATGAGACCCAGAGGTGGAGGCTCTCGCGCTCTAGCTCAT
CGTCCTCCTCTTTGTCCCGTCGGTCCTCGGACTTAGATTCAGCGTCCGTGGACTCGGATGTGTACGATCTGCCCAAGAGA
GAGGACGCCTTACTTTACCAGAGCAAGAGCTATAATCGTGACTACTGTGAGGAGAATTACTTGACCACCACGACTTACGG
GGAGCCTGAGTCTGCGGGCACATCCGAGGGCTTCCGCCAGCCCTCGGCTTCGCTCCGTGGTGCTGACACCTTTCAGCACC
AGGGTCGCGATGACGGTCTTTTCTCTTCTGAAGAGGAGGGCAACGATAGGGAACGCCCCGTGTATGGCCGGGACAGTGCC
TACCAGAGCATCGCACACTACCGCCCAGCTTCCAACATCTCCAGAAGCTCCCTGGGCCTGTCCCGTTACCCCAGCTACTC
CTCCACCTCTGCCGTGTCCTCGCCTTCATCTCCTCTTTCGTGGCTGGACCGCCGTGCCATCCGG

Alignment

ORF - retro_ttru_314 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.17 %
• Parental protein coverage: 81.57 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MDDYAVLSDTELAAVLRQYNIPHGPVVGSTRKLYEKKIFEYETQRRRLSPPNSSASSFSCRFSDLDSASV
          MDDYA.LSDTELAA.LRQYNIPHGP.VGS.RK.YEKKIFEYETQR.RLS...SS.SS.S.R.SDLDSASV
Retrocopy MDDYAALSDTELAALLRQYNIPHGPIVGSNRKFYEKKIFEYETQRWRLSRSSSSSSSLSRRSSDLDSASV

Parental  DSDMYDLPKKEDALLYQSKGYNYDYCEESYLTTRTYGEPESVGTSKGFRQPSASLSDADTFHHQVHDDNL
          DSD.YDLPK.EDALLYQSK.YN.DYCEE.YLTT.TYGEPES.GTS.GFRQPSASL..ADTF.HQ..DD.L
Retrocopy DSDVYDLPKREDALLYQSKSYNRDYCEENYLTTTTYGEPESAGTSEGFRQPSASLRGADTFQHQGRDDGL

Parental  FSSEEEGKDRERPVYGRDSAYQSIAHYRPVSNVSRSSLGLSYYPTSSSTSAVSSPSSPPSWLARRAIR
          FSSEEEG.DRERPVYGRDSAYQSIAHYRP.SN.SRSSLGLS.YP..SSTSAVSSPSSP.SWL.RRAIR
Retrocopy FSSEEEGNDRERPVYGRDSAYQSIAHYRPASNISRSSLGLSRYPSYSSTSAVSSPSSPLSWLDRRAIR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_314 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_314 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000011853	1 retrocopy	retro_cjac_2674,
Tursiops truncatus	ENSTTRG00000013924	1 retrocopy	retro_ttru_314 ,