RetrogeneDB ID: retro_ttru_326

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_1873:101971..102400(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SPINT2
• Ensembl ID: ENSTTRG00000009665
• Aliases: None
• Description: serine peptidase inhibitor, Kunitz type, 2 [Source:HGNC Symbol;Acc:11247]

Sequence

>retro_ttru_326
GACTTTTGCCGAGTTTCGAAGAGTGTGGGGAAATGCCGGGCCTCCATCCCTAAGTGGTGGTACAATGTCACTGACGGATC
CTGCCAGCAGTGTGTGTACGGAGGCTGTGGAGGGAATGACAATAATTCCATGACCAAGGAGGAGTGTCTTGCAAAGTGTG
CTGGTGTCACAGTAAACACCATCGATGACCTGTCCAGGAATGGAGCAGATTCCTCTGTCCCAAGTGTTCCCGGAAGGCAG
GATTCTGATGACCTGTCCAGTGATATGTTCAACTGTGAAGAACACTGCACTGCCAAGGCCGTTCCTGGGGCTTGCCGTGC
ATCCTTCCCACGCTGGTACTTTAATGCCGAGAAGAACTCTTGTGATAACTTCACCTACGGCGGATGCCGGGGCAATAAAA
ACAGCTACCCCTCCAAGGAGGAGTGCGTG

Alignment

ORF - retro_ttru_326 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.12 %
• Parental protein coverage: 57.43 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DFCRVSKSVGKCRASIPRWWYNVTDGSCQQFVYGGCGGNDNNYMTHEECLAKCAGVTVNTINELSRNGAD
          DFCRVSKSVGKCRASIP.WWYNVTDGSCQQ.VYGGCGGNDNN.MT.EECLAKCAGVTVNTI..LSRNGAD
Retrocopy DFCRVSKSVGKCRASIPKWWYNVTDGSCQQCVYGGCGGNDNNSMTKEECLAKCAGVTVNTIDDLSRNGAD

Parental  SSVPSVPRRQXXXXXXXXXXXXXXHCTAKAITGPCRASFPRWYFNAEKNSCDNFIYGGCRGNKNSYLSKE
          SSVPSVP.RQ..............HCTAKA..G.CRASFPRWYFNAEKNSCDNF.YGGCRGNKNSY.SKE
Retrocopy SSVPSVPGRQDSDDLSSDMFNCEEHCTAKAVPGACRASFPRWYFNAEKNSCDNFTYGGCRGNKNSYPSKE

Parental  ECM
          EC.
Retrocopy ECV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_326 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_326 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000001998	2 retrocopies	retro_mluc_2132, retro_mluc_2133,
Tursiops truncatus	ENSTTRG00000009665	1 retrocopy	retro_ttru_326 ,