RetrogeneDB ID:

retro_ttru_348

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_1957:844845..845383(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:AKTIP
Ensembl ID:ENSTTRG00000012705
Aliases:None
Description:AKT interacting protein [Source:HGNC Symbol;Acc:16710]


Retrocopy-Parental alignment summary:






>retro_ttru_348
GTTGTAAAGCAGAAGTTACTTGGTGTCTATGAGTAGCCATCTTATAGCTCTTCATTAATGTGGTTCAGAGTAGCATTCAT
ATGGCAATGACTTTATCAAGATGACACATTTAAGTCTATAGTGATTATCACTGATAATTCTCCAGATGGTGACTGTCCAT
GGGGGTTTGATATTTCTATCTTTCACCCACTAGCTGATCCCAACTTAGGTCAACTAGATATTCAGAGAGCATTTGCAAAA
TGCAGGTGGAACCATAAACATAGTTGTTAAGTATTTATGTGTCCATGGAGAGCTGAAACAGCAAGCTTCCTAAAACCAAA
GGCTGCAGTACTGTATAAAAAGATAGTTAGCTTTATGAAAGAAAAATGCTCAACAGTATTAGAGTGTACACTGTGTGTTT
GTTTGATAAACATAAATTAAAAGACCCTATGTAATTAGTTTTTCTCCATGAAATCCGTCTGTATGTGATGAACTCATAGA
GAAGATGCTATCTCATAAAAAGAAACTTGATGAACACCACGATAAAAGTCTTCAGGTT

ORF - retro_ttru_348 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 56.15 %
Parental protein coverage: 63.01 %
Number of stop codons detected: 5
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalVVKQKLPGVYVQPSYRSALMWFGVIFIRHGLYQDGVFKFTVYIPDNYPDGDCPRLVFDIPVFHPLVDPTS
VVKQKL.GVY..PSY.S.LMWF.V.FI...LYQD..FK..V.I.DN.PDGDCP...FDI..FHPL.DP..
RetrocopyVVKQKLLGVYE*PSYSSSLMWFRVAFIWQ*LYQDDTFKSIVIITDNSPDGDCP-WGFDISIFHPLADPNL
ParentalGELDVKRAFAKWRRNYNHIWQVLMYARRVFYKIDTASPLNPEAAVLYE-KDIQLFKSKVVDSVKVCTAHL
G.LD..RAFAK.R.N..H...V.M...R......TAS.L.P.AAVLY..KD..L...K...S..V.T..L
RetrocopyGQLDIQRAFAKCRWNHKHSC*VFMCPWRA----ETASFLKPKAAVLYK<KDS*LYERKMLNSIRVYTVCL
ParentalFDQPKIED-PYAISFSPWNPSVHDEAREKMLTQKKP-EEQHNKSVHV
FD..K..D.PY.ISFSP.NPSV.DE..EKML..KK...E.H.KS..V
RetrocopyFDKHKLKD<PYVISFSP*NPSVCDELIEKMLSHKKKLDEHHDKSLQV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Tursiops truncatus was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_ttru_348 retrocopy.

TSS - click to see more details

Tursiops truncatus was not studied using FANTOM5 data.

Lab - click to see more details

retro_ttru_348 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 20 parental genes, and 32 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000163451 retrocopy
retro_amel_392,
Canis familiaris ENSCAFG000000095001 retrocopy
retro_cfam_1826,
Choloepus hoffmanni ENSCHOG000000136902 retrocopies
retro_chof_2533, retro_chof_629,
Callithrix jacchus ENSCJAG000000014981 retrocopy
retro_cjac_2895,
Cavia porcellus ENSCPOG000000065231 retrocopy
retro_cpor_622,
Dasypus novemcinctus ENSDNOG000000049064 retrocopies
retro_dnov_1376, retro_dnov_1776, retro_dnov_2080, retro_dnov_756,
Equus caballus ENSECAG000000203811 retrocopy
retro_ecab_504,
Homo sapiens ENSG000001669712 retrocopies
retro_hsap_1458, retro_hsap_3152,
Gorilla gorilla ENSGGOG000000148211 retrocopy
retro_ggor_1122,
Microcebus murinus ENSMICG000000108103 retrocopies
retro_mmur_124, retro_mmur_333, retro_mmur_985,
Microcebus murinus ENSMICG000000167931 retrocopy
retro_mmur_1191,
Monodelphis domestica ENSMODG000000257881 retrocopy
retro_mdom_1881,
Nomascus leucogenys ENSNLEG000000011061 retrocopy
retro_nleu_2660,
Otolemur garnettii ENSOGAG000000144951 retrocopy
retro_ogar_365,
Oryzias latipes ENSORLG000000137471 retrocopy
retro_olat_30,
Pongo abelii ENSPPYG000000073512 retrocopies
retro_pabe_1204, retro_pabe_1205,
Pan troglodytes ENSPTRG000000081161 retrocopy
retro_ptro_2282,
Rattus norvegicus ENSRNOG000000119561 retrocopy
retro_rnor_1611,
Tupaia belangeri ENSTBEG000000171055 retrocopies
retro_tbel_1063, retro_tbel_2864, retro_tbel_3350, retro_tbel_4130, retro_tbel_853,
Tursiops truncatus ENSTTRG00000012705 1 retrocopy
retro_ttru_348 ,


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