RetrogeneDB ID: retro_ttru_388

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_21:172975..174043(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MAOA
• Ensembl ID: ENSTTRG00000009039
• Aliases: None
• Description: monoamine oxidase A [Source:HGNC Symbol;Acc:6833]

Sequence

>retro_ttru_388
ACTGCTGGGCAGTTTGCATCTTTCTTTGTGAATATCAGTGTGACCTCTGAACCCCACGAGGTGTCTGCCCTGTGGTTCTC
GTGGTATGTGAAGCAGTGTGGAGGCACCACTCAGATATCCTCCATTACCAACGGGGCCAGGAACGGAAGTCTGCAGGTGG
ATCTGGTCAGCCAAGCAAGCGGATAATGCACCTCCTCGGGGACAGAGTGAAGCTGGGGTGTCCTGTCACCTATGTGGACC
AGTCAGGTGACAACATCATGATGGAGATGCTGGATCATCAACTTTATGAGTGCCGATACGTAATTAGTGCCATCCCTCCA
ACTTTCACTGCCAAGATACACGTCAGAGCAGAGCTTCCTTCAGAGAGAAACCAGTTAATCCAGCGTCTTCCAGTGGGGGC
TATCATTAAGTGCATGACGTATTACAAGGAGGCCTTTTGGAAGAAAAAGGATTACTGCGGCTGTATGATCATCGAAGATG
AGGAAGCTCCGATTTCAATAACGCTGGATGACACCAAGCCAGATGGATCGCTGCCCACCCTCATGGGTTTCATCCTTGCT
CGAAAAGCTGACCGCCTTCCTGAGGTCCATAAAGAACTAAGGAAGAGGAGAATCTGTGAGCTGTATGCCAAAGCGCTAGG
ATCCCAAGAAGCTTTACAACGGTGCGCTATGAGGAGAAGAACTGGTGTGAGGAGGGGTACTCCGGGGGCTGCCACACTGC
CCACCTCCCCCCTGGGATATGACTCAGTACGGAAGGGTGATTCGCCAGCCCGTAGGCAGGATTTACGTTGCTGGCATGAA
GACTGCCACACAGTGGAGCGGTCACATGCAAGGAGCAGTAGAGGCTGGAGAACGGGCAGCTGGAGAGGTCTTGAATGCTT
TGGGGAAGGCGGCAAAGAGAGACATATGGGTCCAAGAACCTGAATCAGAGGATGTTCCAGCTGTAGAAATCACGCACACC
TTCTGGGAGAGGAACTGGCCTTCCGTGACAGGCCTGCTGAAGATCGTCGGATTTTCCACATCGATAACTGCCCTGTGGTT
TGTGGTGTACAAATTCAGGCTGCCGACC

Alignment

ORF - retro_ttru_388 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.56 %
• Parental protein coverage: 99.44 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  TARQFASLFVNINVTSEPHEVSALWFLWYVKQCGGTTRIFSITNG-GQERKFVGGSGQVSERIMHLLGDR
          TA.QFAS.FVNI.VTSEPHEVSALWF.WYVKQCGGTT.I.SITNG.GQERK..GGSGQ.S.RIMHLLGDR
Retrocopy TAGQFASFFVNISVTSEPHEVSALWFSWYVKQCGGTTQISSITNG<GQERKSAGGSGQPSKRIMHLLGDR

Parental  VKLRCPVTYVDQSGDNIMIETLNHQLYECRYVISAVPPTLTAKIHFRPELPSERNQLIQRLPMGNIIKCM
          VKL.CPVTYVDQSGDNIM.E.L.HQLYECRYVISA.PPT.TAKIH.R.ELPSERNQLIQRLP.G.IIKCM
Retrocopy VKLGCPVTYVDQSGDNIMMEMLDHQLYECRYVISAIPPTFTAKIHVRAELPSERNQLIQRLPVGAIIKCM

Parental  MYYKEAFWKTPDYCGCMIIEDEEAPISITLDDTKPDGSLPAIMGFILARKADRLAKVHKELRKRKICELY
          .YYKEAFWK..DYCGCMIIEDEEAPISITLDDTKPDGSLP..MGFILARKADRL..VHKELRKR.ICELY
Retrocopy TYYKEAFWKKKDYCGCMIIEDEEAPISITLDDTKPDGSLPTLMGFILARKADRLPEVHKELRKRRICELY

Parental  AKVLGSQEALQ-PVHYEEKNWCEEQYSGGCYTAYFPPGI-MTQYGRVIRQPVGRIYFAGTETATQWSGYM
          AK.LGSQEALQ..V.YEEKNWCEE.YSGGC.TA..PPGI.MTQYGRVIRQPVGRIY.AG..TATQWSG.M
Retrocopy AKALGSQEALQ<TVRYEEKNWCEEGYSGGCHTAHLPPGI<MTQYGRVIRQPVGRIYVAGMKTATQWSGHM

Parental  EGAVQAGERAAREVLNALGKVAKKDIWVQEPESEDVPAVEITHTFWERNLPSVTGLLKIVGFSTSITALW
          .GAV.AGERAA.EVLNALGK.AK.DIWVQEPESEDVPAVEITHTFWERN.PSVTGLLKIVGFSTSITALW
Retrocopy QGAVEAGERAAGEVLNALGKAAKRDIWVQEPESEDVPAVEITHTFWERNWPSVTGLLKIVGFSTSITALW

Parental  FAACKFRLLT
          F...KFRL.T
Retrocopy FVVYKFRLPT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_388 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_388 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000001030	1 retrocopy	retro_cpor_1369,
Tursiops truncatus	ENSTTRG00000009039	1 retrocopy	retro_ttru_388 ,