RetrogeneDB ID: retro_ttru_557

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_2676:59864..60514(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C22orf23
• Ensembl ID: ENSTTRG00000004815
• Aliases: None
• Description: chromosome 22 open reading frame 23 [Source:HGNC Symbol;Acc:18589]

Sequence

>retro_ttru_557
ATGGCTTCCCAGGAGAGGATGGAGACAGTGACCAAAGGAACTGGGTTCTGGCGCTGCCCCAAGCCAGCCACTTACATCCC
AGGGACCTGCGAGCTGCTCAGAGTGATGTTGAAGGAATCCAAACTGACAAACTTCCAACAGCGCCACATCATGGACACCA
TGAAACGAGGAGACACTCTCCCCCTACAGTGCAGCCCAACTTCCAGCTAGAGGGTCTTGCCTTCCAAGCCGCCGGCCTCA
GCCATCTGCTTGCCTCCCATCCTGGCTGCCCGGTCCCACCTCCGGACTGCCAGCGTGTGCCAAGACAACGGGGCCTACAG
CCGGGAGCAGCTGAAGCCTCAAACCACCCGAGATGTGGAGAAGGAGAAGCGCAGACTCCGAAATATTTTTGCCACCAGGA
AAGAGCCAGAGGAATGGAAAAGAAAGCCCCTCCTATGCGACAGGAGGGCCCAGCCCCTGAGCTGGACCGGTGTGAAGAAT
TGGTGAAGGAAATCCAGGAGAGGAAAGAATTCCTGGCTGACATGGAGGCCCTAGGGCAGCGCAGACAGTACCGAGGGCTC
ATCCTTACTGAAATCTCCCAGAAACTACAGGAAATGGAAGACCTTGACCACAAGAGGAGTGAGGAACTTAGGAAGGCTCT
TGCCACCACT

Alignment

ORF - retro_ttru_557 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.32 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MASQERVETVTKGAGFWRCPKPATYTPETCELLRVMMKESKLTNFQRRHIMDTMKRGDTLPLQCSPTSCQ
          MASQER.ETVTKG.GFWRCPKPATY.P.TCELLRVM.KESKLTNFQ.RHIMDTMKRGDTLPLQCSPTS..
Retrocopy MASQERMETVTKGTGFWRCPKPATYIPGTCELLRVMLKESKLTNFQQRHIMDTMKRGDTLPLQCSPTSS*

Parental  RVLPSKQPAPAIYLPPILAVRSHLRPASMCQANGAYSRERFKPQATRDLEKEKRRLQNIFATGKEPVERK
          RVLPSK.PA.AI.LPPILA.RSHLR.AS.CQ.NGAYSRE..KPQ.TRD.EKEKRRL.NIFAT.KEP.E.K
Retrocopy RVLPSKPPASAICLPPILAARSHLRTASVCQDNGAYSREQLKPQTTRDVEKEKRRLRNIFATRKEPEEWK

Parental  KKP-PPVRQENPAPELDRFEELVKEIQERKEFLADMEALGQGRQYQAIILTEISQKLQEMEDLDHKRSEE
          .KP.PP.RQE.PAPELDR.EELVKEIQERKEFLADMEALGQ.RQY...ILTEISQKLQEMEDLDHKRSEE
Retrocopy RKP<PPMRQEGPAPELDRCEELVKEIQERKEFLADMEALGQRRQYRGLILTEISQKLQEMEDLDHKRSEE

Parental  LRKALATT
          LRKALATT
Retrocopy LRKALATT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_557 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_557 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tursiops truncatus	ENSTTRG00000004815	1 retrocopy	retro_ttru_557 ,