RetrogeneDB ID: retro_ttru_668

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_3037:6456..6926(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DUSP22
• Ensembl ID: ENSTTRG00000001848
• Aliases: None
• Description: dual specificity phosphatase 22 [Source:HGNC Symbol;Acc:16077]

Sequence

>retro_ttru_668
AAGAACAAGATGACACACATTCTGTCTCTGCACTACAGCGCCAGGCCAACATTGGAGGGGGTTAAATACCTGTGCATACC
AGCAGCGGATTCACCATCTCAAAACCTGACAAGACATTTCAAAGAAAGTATTAAATTCATCCACTAGTGCGCCTGCGAGG
TGAGGGCTGCCCTGTTCACTGCCTGGCCGGCGTCTCCAGGAGTGTGAGTCTGGTGGTTGCATACATCATGACGGTCACCG
ACTTCGGCTGGGAAGATGCCCTGTGCACTGTGCATGCAGGGAGGTCCTGTGCACACCCCAACCTGGGCCTCCAGAGGCAG
CTCCAGGAGTTTGAGGAGCACCAGGTCCATCACTTCCGCCAGTGGCTGAAGGAGGAGTACGGAGAGAGCCCTTTGCGGGA
TGCGGAAGAAACCAGAGGCCTTCTGGCCACCCCAGGAATTCTGAAGTACTGGGCCTCTCTCAGAAGACTG

Alignment

ORF - retro_ttru_668 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.61 %
• Parental protein coverage: 88.7 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KNQVTHILSVHDSARPALEGVKYLCIPAADSPSQNLTRHFKESIQFIHEC-RLRGEGCLVHCLAGVSRSV
          KN..THILS.H.SARP.LEGVKYLCIPAADSPSQNLTRHFKESI.FIH.C.RLRGEGC.VHCLAGVSRSV
Retrocopy KNKMTHILSLHYSARPTLEGVKYLCIPAADSPSQNLTRHFKESIKFIH*C<RLRGEGCPVHCLAGVSRSV

Parental  TLVVAYIMTVTDFGWEDALRTVRAGRSCANPNLGFQRQLQEFEEHQVCQFRQWLKEEYGESPLRDAEEAR
          .LVVAYIMTVTDFGWEDAL.TV.AGRSCA.PNLG.QRQLQEFEEHQV..FRQWLKEEYGESPLRDAEE.R
Retrocopy SLVVAYIMTVTDFGWEDALCTVHAGRSCAHPNLGLQRQLQEFEEHQVHHFRQWLKEEYGESPLRDAEETR

Parental  GILATPGILKYWASLRRL
          G.LATPGILKYWASLRRL
Retrocopy GLLATPGILKYWASLRRL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_668 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_668 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000011289	1 retrocopy	retro_etel_1581,
Rattus norvegicus	ENSRNOG00000018218	2 retrocopies	retro_rnor_858, retro_rnor_887,
Sarcophilus harrisii	ENSSHAG00000015165	2 retrocopies	retro_shar_241, retro_shar_310,
Tursiops truncatus	ENSTTRG00000001848	1 retrocopy	retro_ttru_668 ,