RetrogeneDB ID: retro_ttru_791

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_346:129258..129687(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FAM162A
• Ensembl ID: ENSTTRG00000013401
• Aliases: None
• Description: family with sequence similarity 162, member A [Source:HGNC Symbol;Acc:17865]

Sequence

>retro_ttru_791
AGTTATTTTAGGTTCTGTGAAAGAGATGCTTTCTCATCTTTAAGGCTTACCAGAAACTCTGATTTGAAGAGAATAAATGG
ATTTTGCAACAAACTCCGGGAAAGTCCAAAGCCTCCAGCCCACACTTACGGCCACAGAGCGCCATTGCATAAGCCTACGG
ATTGGGAGAAGAAGATCCTAACATGGTCAGGTCGCTTCAAAAAGGAAGATGAAATCCCAGAGACTGTCTCGTTTGAGATG
CTCGATGCTGCAAAGAACAAGGTCCGGGTGAAGATCGGCTATGTAATGATTGCCTAGACAGTGGCAGGATGCACCTTGAT
GGTTACTGAGGGCAAGGAGGCTGCCAAAAGAAACGAGTCTTTAACAAGCCTGAACCTAGAAAAGAAAGCTGGTCTGAGAG
AAGAAGCTGCTGTGAAGGCCAAAACAGAG

Alignment

ORF - retro_ttru_791 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.31 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SYFRFCERDAVSSLRPTRNSDLKRINGFCNKPQESPKPPTHTYSHRVPLHKPTDWEKKILIWSGRFKKED
          SYFRFCERDA.SSLR.TRNSDLKRINGFCNK..ESPKPP.HTY.HR.PLHKPTDWEKKIL.WSGRFKKED
Retrocopy SYFRFCERDAFSSLRLTRNSDLKRINGFCNKLRESPKPPAHTYGHRAPLHKPTDWEKKILTWSGRFKKED

Parental  EIPETVSFEMLDAA-NKVRAKISYVLIA-TVAGRIRMVIEGKKGAKRHESLTSLNLEKKARLREEAAVKA
          EIPETVSFEMLDAA.NKVR.KI.YV.IA.TVAG...MV.EGK..AKR.ESLTSLNLEKKA.LREEAAVKA
Retrocopy EIPETVSFEMLDAAKNKVRVKIGYVMIA*TVAGCTLMVTEGKEAAKRNESLTSLNLEKKAGLREEAAVKA

Parental  KTE
          KTE
Retrocopy KTE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_791 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_791 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000014316	1 retrocopy	retro_amel_1533,
Monodelphis domestica	ENSMODG00000018300	1 retrocopy	retro_mdom_785,
Mustela putorius furo	ENSMPUG00000004773	1 retrocopy	retro_mputfur_1616,
Otolemur garnettii	ENSOGAG00000003194	1 retrocopy	retro_ogar_2064,
Rattus norvegicus	ENSRNOG00000002255	2 retrocopies	retro_rnor_2587, retro_rnor_337,
Tursiops truncatus	ENSTTRG00000013401	1 retrocopy	retro_ttru_791 ,