RetrogeneDB ID: retro_ttru_816

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_3527:233179..234593(-)
• Located in intron of: ENSTTRG00000014416

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZFYVE1
• Ensembl ID: ENSTTRG00000012211
• Aliases: None
• Description: zinc finger, FYVE domain containing 1 [Source:HGNC Symbol;Acc:13180]

Sequence

>retro_ttru_816
AAAGTAGCAGTGATAGACACAGAAGGGCTCTTGTGGGCTACAGAGAATCTAAGCCAGAGAACACGGCTGCTGCTTAAGGT
CCTGGCCATTTCAGACCTCGTCATCTATCGAACTCATGCAGACTGGCTGCACAATGACCTCTTCAAGTTCCTTGGGGACG
CCTCAGAAGCTTATCTGAAGCACTTCACCAAGGAGCTCAAGGCTACCACTGCCCGCTGTGGCCTGGATGTCCCCCTGTCC
ACCCTGGGCCCTGCTGTTATCGTTTTCCACGAGCCTGTGCACACTCAGCTGCTAGACTCTAATCGCCCCTCCGAGGTGCC
CGAGAAGCTCATCCAGGACCGGTTCCGGAAGCTGGGCCGCTTCCCTGAAGCCTTCAGTTCTATTCGTTACAAGGGAACGA
GGACATACAATCCTCCCACAGACTTTTCTGGTCTTCGGCGTGCTTTGGAGCAACAACTAGAGAATAACAACACCCGTTCT
CCCCGGCACCCGGGGATCATCTTCAAAGCTCTGAAGGCCCTCAGCGACCGCTTCAGCGGTGAGCTCCCAGATGACGAGAT
GGCACACGGCTCCCTTTTTCCAGATGAGTACTTCACCTGCTCCGTCCTGGGCCTCAGCTGTGGGGCTGCATGTAAGAACA
GCATGAATCACGGGAAAGAAGGAGTACCTCGTGAAGCCAAAAGCCGCTGCAGATACTCTCACCAGTATGACAACCGGGTT
TTTACCTGCAAGGCCTGCTAACGAGAGAGGCAATGAAGTCAGCGTGGTGCCCAAGACGGCTGCTTCAACCGACTCCCCCT
GGATGGGTCTCGCAAAATATGCCTGGTCTGGGTACGTAATCGAATGTCCCAACTGCGGCGTGGTCTATCGTAGCCGGCGG
TACTGGTTTGGGAACCAGTATCCTGTGGACACAGTGGTGCAGACAGAGATTGTGCATGTGTGGCCTGGAACTGATGGATT
TCTGAAGGACAACAACAATGCTGCCCAGCGCCTCTTGGATGGGATGAACTTCATGGCTCAGTCGGTGTCTGAGCTTAGCC
TTGGGCCCACCAAGGTTGTGACGTCCTGGCTGACAGACCAGATCGCCCCTGCCTACTGGAGGCCCAACTCCCAGATCCTG
AGCTGCAACAAGTGTGCTACATCCTTTAAAGATAATGACACCAAGCATCACTGCTGGGCCTGGGGGGAGGGCTTCTGTGA
CAGCTGTTCACCCACGACCCGGCCAGTGCTGGAGCGGGGCTGGGGCCCTGTGCCCGTGTGGGTGTGTGACAACTGCTATG
AAGCCAGGAATTCTCAGTTAGAAGTTACTGAGGCACAGGTGGATGATGAGGGCGGGACGCTGATTGTTCGGAAGGTGGGC
AAGTCCGTGCAGAACACTTTGGGAGCTGTGGTGACGGCCAATGACATACCACTA

Alignment

ORF - retro_ttru_816 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.53 %
• Parental protein coverage: 67.24 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KVAVIDTEGLLGATVNLSQRTRLLLKVLAISDLVIYRTHADRLHNDLFKFLGDASEAYLKHFTKELKATT
          KVAVIDTEGLL.AT.NLSQRTRLLLKVLAISDLVIYRTHAD.LHNDLFKFLGDASEAYLKHFTKELKATT
Retrocopy KVAVIDTEGLLWATENLSQRTRLLLKVLAISDLVIYRTHADWLHNDLFKFLGDASEAYLKHFTKELKATT

Parental  ARCGLDVPLSTLGPAVIIFHETVHTQLLGSDHPSEVPEKLIQDRFRKLGRFPEAFSSIHYKGTRTYNPPT
          ARCGLDVPLSTLGPAVI.FHE.VHTQLL.S..PSEVPEKLIQDRFRKLGRFPEAFSSI.YKGTRTYNPPT
Retrocopy ARCGLDVPLSTLGPAVIVFHEPVHTQLLDSNRPSEVPEKLIQDRFRKLGRFPEAFSSIRYKGTRTYNPPT

Parental  DFSGLRRALEQQLENNTTRSPRHPGVIFKALKALSDRFSGEIPDDQMAHSSFFPDEYFTCSVLCLSCGAG
          DFSGLRRALEQQLENN.TRSPRHPG.IFKALKALSDRFSGE.PDD.MAH.S.FPDEYFTCSVL.LSCGA.
Retrocopy DFSGLRRALEQQLENNNTRSPRHPGIIFKALKALSDRFSGELPDDEMAHGSLFPDEYFTCSVLGLSCGAA

Parental  CK-IMNHGKEGVPHEANSRCRYSHQYDNRVFTCKAC-YERGNEVSVVPKTAASTDSPWMGLAKYAWSGYV
          CK..MNHGKEGVP.EA.SRCRYSHQYDNRVFTCKAC..ERGNEVSVVPKTAASTDSPWMGLAKYAWSGYV
Retrocopy CKNSMNHGKEGVPREAKSRCRYSHQYDNRVFTCKAC>NERGNEVSVVPKTAASTDSPWMGLAKYAWSGYV

Parental  IECPNCGVVYRSRQYWFGNQDPVDTVVRTEIVHVWPGTDGFLKDNNNAAQRLLDGMNFMAQSVSELSLGP
          IECPNCGVVYRSR.YWFGNQ.PVDTVV.TEIVHVWPGTDGFLKDNNNAAQRLLDGMNFMAQSVSELSLGP
Retrocopy IECPNCGVVYRSRRYWFGNQYPVDTVVQTEIVHVWPGTDGFLKDNNNAAQRLLDGMNFMAQSVSELSLGP

Parental  TKAVTSWLTDQIAPAYWRPNSQILSCNKCATSFKDNDTKHHCRACGEGFCDSCSSKTRPVPERGWGPAPV
          TK.VTSWLTDQIAPAYWRPNSQILSCNKCATSFKDNDTKHHC.A.GEGFCDSCS..TRPV.ERGWGP.PV
Retrocopy TKVVTSWLTDQIAPAYWRPNSQILSCNKCATSFKDNDTKHHCWAWGEGFCDSCSPTTRPVLERGWGPVPV

Parental  RVCDNCYEARNSQLDVTEAQADDEGGTLIARKVGEAVQNTLGAVVTAIDIPL
          .VCDNCYEARNSQL.VTEAQ.DDEGGTLI.RKVG..VQNTLGAVVTA.DIPL
Retrocopy WVCDNCYEARNSQLEVTEAQVDDEGGTLIVRKVGKSVQNTLGAVVTANDIPL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_816 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_816 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tursiops truncatus	ENSTTRG00000012211	1 retrocopy	retro_ttru_816 ,