RetrogeneDB ID: retro_ttru_824

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_3568:160612..161707(-)
• Located in intron of: ENSTTRG00000016640

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ANKRD40
• Ensembl ID: ENSTTRG00000000221
• Aliases: None
• Description: ankyrin repeat domain 40 [Source:HGNC Symbol;Acc:28233]

Sequence

>retro_ttru_824
ATGAGCGCTCTCCTGGAGCAGAAGGAGCAGCAGGAGAGGCTGCGGGAGGCCGCGGCCTTGGGGGACATTCGGGAGGTGCA
GAAACTGGTGGAGAGCGGGGTGGATGTGAACTCCCAAAATGAGGTCAACGGCTGGACCTGTTTACACTGGGCATGTAAAC
GCAACCATGGTCAGGTGGTCTCTTACTTGTTAAAATCGGGAGCTGACAAAGAGATTCTTACCACAAAGGGAGAAATGCCA
GTCCAATTAACATCAAGGAGAGAAATTAGGAAGATTATGGGAGTGGAAGATGATGATGATAACCATGACGACCTCCCTCA
GCTGAAGAAGGAGTCAGAGCTGCCCTTTGTTCCGAACTATTTGGCCAACCCAGCCTTCCCTTTCATCTATACCCCTGGGT
CGGAGGATTCAGCCCAGCTGCAGAATGGGGGCCCCTCCACACCTCCTGCATCACCCCCTGCAGATGGCTCACCTCCATTG
CTGCCCCCTGGGGAACCTCCCCTGCTTGGGGCCTTTCCACGGGACCACACCTCTTTGGCACTGGTTCAGAATGGGGATGT
GTCTGCCCCATCTGCCATACTCAGAACACCAGAAAGCACAAAACCGGGTCCTGTTTGTCAGCCACCGGTGAGTCAGAGTC
GCTCCCTGTTCTCTTCTGTCCCGTCCAAGCCACCAATGTCTCTGGAGCCTCAAAATGGGACGTATGCAGGACCAGCGCCA
GCATTCCAGCCATTTTTCTTCACCGGAGCATTTCCATTTAATATGCAAGAGCTGGTACTCAAGGTGAGGATTCAGAACCC
ATCTCTTCGAGAAAATGATTTCATTGAAATTGAACTGGACAGACAGGAACTCACCTACCAAGAATTGCTCAGAGTGAGTT
GCTGTGAGCTGGGTGTTAATCCTGATCAAGTGGAGAAGATCAGAAAGTTACCCAATACTCTGGTAAGAAAGGACAAAGAT
GTTGCTCGACTCCAAGATTTCCAGGAGCTGGAACTGGTTCTAATGATAAGTGAAAATAATTTTCTGTTCAGAAATGCTGC
ATCCACACTGACTGAAAGGCCTTGCTACAACAGGAGAGCTTCAAAACTGACTTAC

Alignment

ORF - retro_ttru_824 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.73 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSALLEQKEQQERLREAAALGDIREMQKLVESGVDVNSQNEVNGWTCLHWACKRNHGQVVSYLLKSGADK
          MSALLEQKEQQERLREAAALGDIRE.QKLVESGVDVNSQNEVNGWTCLHWACKRNHGQVVSYLLKSGADK
Retrocopy MSALLEQKEQQERLREAAALGDIREVQKLVESGVDVNSQNEVNGWTCLHWACKRNHGQVVSYLLKSGADK

Parental  EILTTKGEMPVQLTSRREIRKIMGVEDDDDNHDDLPQLKKESELPFVPNYLANPAFPFIYTPGSEDSAQL
          EILTTKGEMPVQLTSRREIRKIMGVEDDDDNHDDLPQLKKESELPFVPNYLANPAFPFIYTPGSEDSAQL
Retrocopy EILTTKGEMPVQLTSRREIRKIMGVEDDDDNHDDLPQLKKESELPFVPNYLANPAFPFIYTPGSEDSAQL

Parental  QNGGPSTPPASPPADGSPPLLPPGEPPLLGAFPRDHTSLALVQNGDVSAPSAILRTPESTKPGPVCQPPV
          QNGGPSTPPASPPADGSPPLLPPGEPPLLGAFPRDHTSLALVQNGDVSAPSAILRTPESTKPGPVCQPPV
Retrocopy QNGGPSTPPASPPADGSPPLLPPGEPPLLGAFPRDHTSLALVQNGDVSAPSAILRTPESTKPGPVCQPPV

Parental  SQSRSLFSSVPSKPPMSLEPQNGTYAGPAPAFQPFFFTGAFPFNMQELVLKVRIQNPSLRENDFIEIELD
          SQSRSLFSSVPSKPPMSLEPQNGTYAGPAPAFQPFFFTGAFPFNMQELVLKVRIQNPSLRENDFIEIELD
Retrocopy SQSRSLFSSVPSKPPMSLEPQNGTYAGPAPAFQPFFFTGAFPFNMQELVLKVRIQNPSLRENDFIEIELD

Parental  RQELTYQELLRVSCCELGVNPDQVEKIRKLPNTLVRKDKDVARLQDFQELELVLMISENNFLFRNAASTL
          RQELTYQELLRVSCCELGVNPDQVEKIRKLPNTLVRKDKDVARLQDFQELELVLMISENNFLFRNAASTL
Retrocopy RQELTYQELLRVSCCELGVNPDQVEKIRKLPNTLVRKDKDVARLQDFQELELVLMISENNFLFRNAASTL

Parental  TERPCYNRRASKLTY
          TERPCYNRRASKLTY
Retrocopy TERPCYNRRASKLTY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_824 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_824 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Equus caballus	ENSECAG00000012574	1 retrocopy	retro_ecab_937,
Rattus norvegicus	ENSRNOG00000002935	2 retrocopies	retro_rnor_1835, retro_rnor_755,
Tursiops truncatus	ENSTTRG00000000221	1 retrocopy	retro_ttru_824 ,