RetrogeneDB ID: retro_ttru_925

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_680:226400..226677(-)
• Located in intron of: ENSTTRG00000015283

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: YBEY
• Ensembl ID: ENSTTRG00000000360
• Aliases: None
• Description: ybeY metallopeptidase (putative) [Source:HGNC Symbol;Acc:1299]

Sequence

>retro_ttru_925
CTGAAAACAGGCAAAATTCCCCAGCCTGATTTTCCAGATTACTATAATTTAGAGACATTTTCCTGGGAGTAGAGTATATC
TTCCAGCACTGCAAAGAAAATGAAGATTCCTATGACATCCTGACTGTGACTGCCACCCACGGGCTCTGTCACCTGCTGAG
CTTCACACACAGCATGGAGGCCGAGTGGCAGAGCGGTACCAGAAGGAGAAGCAGGTTCTCAAGGAGCTGAGCAGGCACAC
AGGGACCAGGTTTCCGCCCCTGAGCAGGGGCCTCTTC

Alignment

ORF - retro_ttru_925 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.11 %
• Parental protein coverage: 98.94 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  LKAGDIPQPEFPDDYNLG-DIFLGVEYIFQHCKENEDYYDILTVTVTHGLCHLLGFTHSMEAEWQ-KMYQ
          LK.G.IPQP.FPD.YNL..DIFLGVEYIFQHCKENED.YDILTVT.THGLCHLL.FTHSMEAEWQ...YQ
Retrocopy LKTGKIPQPDFPDYYNLE<DIFLGVEYIFQHCKENEDSYDILTVTATHGLCHLLSFTHSMEAEWQ<ERYQ

Parental  KEKQVLEELSRYTGTRLQPLSRDLF
          KEKQVL.ELSR.TGTR..PLSR.LF
Retrocopy KEKQVLKELSRHTGTRFPPLSRGLF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_925 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_925 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000002415	1 retrocopy	retro_cpor_185,
Tursiops truncatus	ENSTTRG00000000360	1 retrocopy	retro_ttru_925 ,