RetrogeneDB ID: | retro_ttru_945 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_743:152285..152876(-) | ||
Located in intron of: | ENSTTRG00000015666 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CHAC1 | ||
Ensembl ID: | ENSTTRG00000011476 | ||
Aliases: | None | ||
Description: | ChaC, cation transport regulator homolog 1 (E. coli) [Source:HGNC Symbol;Acc:28680] |
Percent Identity: | 87.82 % |
Parental protein coverage: | 92.86 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | PPSQHPQDDCDPQALWIFGYGSLVWRPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMPGRVVTLLEDR |
P...HPQDD..PQALWI.GYGSLVWRPDFAYSDSRVGFV..YS.R..QGDTFH.GSDKMPGRVVTL.EDR | |
Retrocopy | PRTPHPQDDGGPQALWISGYGSLVWRPDFAYSDSRVGFVHRYSGRL*QGDTFHQGSDKMPGRVVTLPEDR |
Parental | EGCTWGVAYQVQGEQVNEALKYLNVREAVLGSYDTKEVTFYPQDTPDQPLKALAYVATPQNPGYLGPAPE |
EGCTWGVAYQVQGEQVNEALKYLNV.EAVLGSYDTKEVTF.PQD.PDQPLKALAYVATPQNPGYLGPAPE | |
Retrocopy | EGCTWGVAYQVQGEQVNEALKYLNVWEAVLGSYDTKEVTFCPQDAPDQPLKALAYVATPQNPGYLGPAPE |
Parental | EAIATQILVCRGFSGHNLEYLLRLTDFMQLCGPQAQDEHLAAI-DA-STMLPCFCPT |
EAIATQIL.C.GFSGH.LEYLLRL.DF.QLCGPQAQDEHLAAI.DA..TMLPCFCPT | |
Retrocopy | EAIATQILAC*GFSGHSLEYLLRLADFRQLCGPQAQDEHLAAIVDAVGTMLPCFCPT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000017531 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000024541 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000011476 | 2 retrocopies |
retro_ttru_1747, retro_ttru_945 ,
|