Parental gene: | PMDH2, Bra009397 |
| Aliases: | None |
| Description: | AT5G09660 (E=1e-188) PMDH2 | PMDH2 (peroxisomal NAD-malate dehydrogenase 2); malate dehydrogenase |
| Organism: | Chinese cabbage (Brassica rapa) |
| Coordinates: | A10:16464842..16466508(-) |
>Bra009397
ATGGAGTTTCGTGGAGATGCCACCCAGAGAATTGCTATGATATCAGCTCATCTTCAACCTTCTTTCACTTCTCAGATGGA
GGGGAAGAACACTGTGATGGGAAGAGAAAACTGCAGAGGGAAAGGAGGGAAAGCAGGATTCAAAGTAGCAATACTTGGAG
CTGCAGGTGGGATAGGACAATCACTATCGTTGCTAATGAAGATGAACCCTCTCGTCTCTTTACTTCATCTCTACGATGTT
GTCAATGCTCCCGGAGTCACTGCTGACGTCAGCCATATGGACACTGGAGCTGTTGTTAGAGGATTCTTGGGAGCCAAGCA
ACTTGCGGATGCCCTAACGGGTATGGATCTTGTGATCATACCAGCTGGTGTGCCGAGGAAACCAGGGATGACACGCGATG
ATCTCTTCAAAATCAATGCTGGGATTGTTAAGACGCTATGTGAGGGAGTAGCGAAATGCTGTCCTAATGCTATAGTCAAC
TTGATTAGTAACCCTGTGAACTCCACTGTGGCCATTGCCGCTGAGGTTTTCAAGAAAGCTGGAACTTATGATCCTAAGAA
GCTCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTGGCTGAAGTTCTTGGACTTGATCCAAGAGAAG
TCGATGTACCAGTCGTTGGAGGACACGCTGGAGTTACAATATTGCCACTATTGTCACAGGTTAAACCTCCGAGCAGCTTC
ACACCTTCAGAAACAGAGTACCTCACGAACAGGATTCAAAACGGTGGAACTGAAGTAGTGGAGGCGAAAGCTGGAGCTGG
ATCAGCAACACTTTCAATGGCATATGCTGCAGCCAAGTTTGCGGATGCTTGCCTTCGCGGGTTAAGAGGAGATGCGAATG
TGGTTGAATGCTCTTTCGTTGCTTCTCAGGTGACAGAGTTACCTTTCTTTGCAACCAAGGTGCGTCTTGGACGTACAGGA
GCAGAGGAAGTGTATCAGCTTGGACCCTTGAACGAATACGAAAGGGTTGGTCTGGAGAAAGCAAAAGAAGAGTTAGCAGG
AAGTATTCAGAAAGGTGTCGACTTCATCAGGAAATGA
ATGGAGTTTCGTGGAGATGCCACCCAGAGAATTGCTATGATATCAGCTCATCTTCAACCTTCTTTCACTTCTCAGATGGA
GGGGAAGAACACTGTGATGGGAAGAGAAAACTGCAGAGGGAAAGGAGGGAAAGCAGGATTCAAAGTAGCAATACTTGGAG
CTGCAGGTGGGATAGGACAATCACTATCGTTGCTAATGAAGATGAACCCTCTCGTCTCTTTACTTCATCTCTACGATGTT
GTCAATGCTCCCGGAGTCACTGCTGACGTCAGCCATATGGACACTGGAGCTGTTGTTAGAGGATTCTTGGGAGCCAAGCA
ACTTGCGGATGCCCTAACGGGTATGGATCTTGTGATCATACCAGCTGGTGTGCCGAGGAAACCAGGGATGACACGCGATG
ATCTCTTCAAAATCAATGCTGGGATTGTTAAGACGCTATGTGAGGGAGTAGCGAAATGCTGTCCTAATGCTATAGTCAAC
TTGATTAGTAACCCTGTGAACTCCACTGTGGCCATTGCCGCTGAGGTTTTCAAGAAAGCTGGAACTTATGATCCTAAGAA
GCTCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTGGCTGAAGTTCTTGGACTTGATCCAAGAGAAG
TCGATGTACCAGTCGTTGGAGGACACGCTGGAGTTACAATATTGCCACTATTGTCACAGGTTAAACCTCCGAGCAGCTTC
ACACCTTCAGAAACAGAGTACCTCACGAACAGGATTCAAAACGGTGGAACTGAAGTAGTGGAGGCGAAAGCTGGAGCTGG
ATCAGCAACACTTTCAATGGCATATGCTGCAGCCAAGTTTGCGGATGCTTGCCTTCGCGGGTTAAGAGGAGATGCGAATG
TGGTTGAATGCTCTTTCGTTGCTTCTCAGGTGACAGAGTTACCTTTCTTTGCAACCAAGGTGCGTCTTGGACGTACAGGA
GCAGAGGAAGTGTATCAGCTTGGACCCTTGAACGAATACGAAAGGGTTGGTCTGGAGAAAGCAAAAGAAGAGTTAGCAGG
AAGTATTCAGAAAGGTGTCGACTTCATCAGGAAATGA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Arabidopsis thaliana | AT5G09660 | ortholog_one2one | 1 retrogene | |
| Brachypodium distachyon | BRADI4G00910 | ortholog_many2many | 1 retrogene | |
| Triticum aestivum | Traes_5AL_31CDB68F2 | ortholog_many2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_brap_19 | 65.19 | 87.71 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all Bra009397 retrocopies