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retrocopy
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parental gene
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Parental gene
Select an organism
Nothing specified
All 99 species
All 37 plant species
All 62 animal species
Mammals
Marsupials
Rodents
Primates
Birds
Fish
Vertebrates
Invertebrates
Tausch goatgrass
Amborella
Lyre-leaved rock-cress
Mouse-ear cress
Purple false brome
Brassica oleracea
Chinese cabbage
Chlamydomonas reinhardtii
Soybean
Barley
Leersia perrieri
Barrel medic
Wild banana
Oryza barthii
Oryza brachyantha
African rice
Oryza glumaepatula
Rice subsp. indica
Longstamen rice
Oryza meridionalis
Indian wild rice
Red rice
Brownbeard rice
Rice subsp. japonica
Ostreococcus lucimarinus
Moss
Western balsam poplar
Peach
Spikemoss
Foxtail millet
Tomato
Potato
Sorghum
Cacao
Wheat
Grape
Maize
Human (
Homo sapiens
)
Fugu rubripes (
Takifugu rubripes
)
Pacific transparent sea squirt (
Ciona savignyi
)
Rhesus macaque (
Macaca mulatta
)
Lesser hedgehog tenrec (
Echinops telfairi
)
Stickleback (
Gasterosteus aculeatus
)
Medaka (
Oryzias latipes
)
Platypus (
Ornithorhynchus anatinus
)
Opossum (
Monodelphis domestica
)
Treeshrew (
Tupaia belangeri
)
Hedgehog (
Erinaceus europaeus
)
Shrew (
Sorex araneus
)
Mouse Lemur (
Microcebus murinus
)
Orangutan (
Pongo abelii
)
Horse (
Equus caballus
)
Tetraodon (
Tetraodon nigroviridis
)
Southern American pika (
Ochotona princeps
)
Guinea Pig (
Cavia porcellus
)
Sloth (
Choloepus hoffmanni
)
Hyrax (
Procavia capensis
)
Dolphin (
Tursiops truncatus
)
Tarsier (
Tarsius syrichta
)
Kangaroo rat (
Dipodomys ordii
)
Alpaca (
Vicugna pacos
)
Megabat (
Pteropus vampyrus
)
Armadillo (
Dasypus novemcinctus
)
Zebrafinch (
Taeniopygia guttata
)
Wallaby (
Macropus eugenii
)
Elephant (
Loxodonta africana
)
Fruit fly (
Drosophila melanogaster
)
Rabbit (
Oryctolagus cuniculus
)
Panda (
Ailuropoda melanoleuca
)
Zebrafish (
Danio rerio
)
Anole lizard (
Anolis carolinensis
)
Turkey (
Meleagris gallopavo
)
Gibbon (
Nomascus leucogenys
)
Xenopus (
Xenopus tropicalis
)
Marmoset (
Callithrix jacchus
)
Microbat (
Myotis lucifugus
)
Lamprey (
Petromyzon marinus
)
Tasmanian devil (
Sarcophilus harrisii
)
Cow (
Bos taurus
)
Gorilla (
Gorilla gorilla
)
Bushbaby (
Otolemur garnettii
)
Chimpanzee (
Pan troglodytes
)
Cod (
Gadus morhua
)
Vase tunicate (
Ciona intestinalis
)
Coelacanth (
Latimeria chalumnae
)
Tilapia (
Oreochromis niloticus
)
Squirrel (
Ictidomys tridecemlineatus
)
Pig (
Sus scrofa
)
Mouse (
Mus musculus
)
Dog (
Canis familiaris
)
Chinese softshell turtle (
Pelodiscus sinensis
)
Platyfish (
Xiphophorus maculatus
)
Ferret (
Mustela putorius furo
)
Cat (
Felis catus
)
Rat (
Rattus norvegicus
)
Chicken (
Gallus gallus
)
Caenorhabditis elegans (
Caenorhabditis elegans
)
Duck (
Anas platyrhynchos
)
Flycatcher (
Ficedula albicollis
)
Retrocopy status
Nothing specified
KNOWN_PROTEIN_CODING
KNOWN_PSEUDOGENE
NOVEL
Genomic region
+ or - strand
+
-
ORF conservation
Nothing specified
Conserved
Not conserved
Expressed in
Nothing specified
Adipose
Adrenal
Brain
Breast
Colon
Heart
Kidney
Liver
Lung
Lymph node
Muscle
Ovary
Prostate
Spleen
Testis
Thyroid
Articular cartilage
Ascending colon
Brain prefrontal cortex
Cerebellum
Dewlap
Embryo
Gill
Pectoral fin
Pelvic fin
Pharynx
Placenta
Placental villous
Quadricep muscle
Skeletal muscle
Synovial membrane
Tail muscle
White blood cells
Min. expression
Percent identity
Ignore
<
≤
=
≥
>
Identity (range):
AND
OR
Ignore
<
≤
≥
>
Coverage
Ignore
<
≤
=
≥
>
Coverage (range):
AND
OR
Ignore
<
≤
≥
>
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/home/rosikiewicz/RetrogeneDB2/BETA/search.php
on line
2427
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on line
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Order by
Internal MySQL ID
RetrogeneDB ID
Species (latin name)
Identity
Coverage
Stop codons number
Frameshifts number
Ascending
Descending
Frameshifts
Ignore
<
≤
=
≥
>
Frameshifts (range):
AND
OR
Ignore
<
≤
≥
>
Stop codons
Ignore
<
≤
=
≥
>
Stop codons (range):
AND
OR
Ignore
<
≤
≥
>
Inside intron
Nothing specified
Yes
No
of
Has orthologs
Nothing specified
Yes
in:
Eutheria
Teleost
Neognath
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/home/rosikiewicz/RetrogeneDB2/BETA/search.php
on line
2588
Experimentally validated
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on line
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ChIP-Seq validated
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EST validated
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TSS validated
Population specific
Nothing specified
Yes
Select columns to show in the result table
Order number - # (mendatory)
Retrocopy ID (mendatory)
Species
Genomic coordinates
Retrocopy status
Parental gene ID
Inside intron of
Identity
Coverage
Stop codons
Frameshifts
Conserved ORF - (mendatory) - content of this field will not be displayed in the downloaded result
Expression evidence - (mendatory) - content of this field will not be displayed in the downloaded result
RDV - (mendatory) - content of this field will not be displayed in the downloaded result
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Hide additional search options
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Reset form
Specify search parameters:
Leave this field empty
Parental gene name
Select an organism
Nothing specified
All 99 species
All 37 plant species
All 62 animal species
Mammals
Marsupials
Rodents
Primates
Birds
Fish
Vertebrates
Invertebrates
Tausch goatgrass
Amborella
Lyre-leaved rock-cress
Mouse-ear cress
Purple false brome
Brassica oleracea
Chinese cabbage
Chlamydomonas reinhardtii
Soybean
Barley
Leersia perrieri
Barrel medic
Wild banana
Oryza barthii
Oryza brachyantha
African rice
Oryza glumaepatula
Rice subsp. indica
Longstamen rice
Oryza meridionalis
Indian wild rice
Red rice
Brownbeard rice
Rice subsp. japonica
Ostreococcus lucimarinus
Moss
Western balsam poplar
Peach
Spikemoss
Foxtail millet
Tomato
Potato
Sorghum
Cacao
Wheat
Grape
Maize
Human (
Homo sapiens
)
Fugu rubripes (
Takifugu rubripes
)
Pacific transparent sea squirt (
Ciona savignyi
)
Rhesus macaque (
Macaca mulatta
)
Lesser hedgehog tenrec (
Echinops telfairi
)
Stickleback (
Gasterosteus aculeatus
)
Medaka (
Oryzias latipes
)
Platypus (
Ornithorhynchus anatinus
)
Opossum (
Monodelphis domestica
)
Treeshrew (
Tupaia belangeri
)
Hedgehog (
Erinaceus europaeus
)
Shrew (
Sorex araneus
)
Mouse Lemur (
Microcebus murinus
)
Orangutan (
Pongo abelii
)
Horse (
Equus caballus
)
Tetraodon (
Tetraodon nigroviridis
)
Southern American pika (
Ochotona princeps
)
Guinea Pig (
Cavia porcellus
)
Sloth (
Choloepus hoffmanni
)
Hyrax (
Procavia capensis
)
Dolphin (
Tursiops truncatus
)
Tarsier (
Tarsius syrichta
)
Kangaroo rat (
Dipodomys ordii
)
Alpaca (
Vicugna pacos
)
Megabat (
Pteropus vampyrus
)
Armadillo (
Dasypus novemcinctus
)
Zebrafinch (
Taeniopygia guttata
)
Wallaby (
Macropus eugenii
)
Elephant (
Loxodonta africana
)
Fruit fly (
Drosophila melanogaster
)
Rabbit (
Oryctolagus cuniculus
)
Panda (
Ailuropoda melanoleuca
)
Zebrafish (
Danio rerio
)
Anole lizard (
Anolis carolinensis
)
Turkey (
Meleagris gallopavo
)
Gibbon (
Nomascus leucogenys
)
Xenopus (
Xenopus tropicalis
)
Marmoset (
Callithrix jacchus
)
Microbat (
Myotis lucifugus
)
Lamprey (
Petromyzon marinus
)
Tasmanian devil (
Sarcophilus harrisii
)
Cow (
Bos taurus
)
Gorilla (
Gorilla gorilla
)
Bushbaby (
Otolemur garnettii
)
Chimpanzee (
Pan troglodytes
)
Cod (
Gadus morhua
)
Vase tunicate (
Ciona intestinalis
)
Coelacanth (
Latimeria chalumnae
)
Tilapia (
Oreochromis niloticus
)
Squirrel (
Ictidomys tridecemlineatus
)
Pig (
Sus scrofa
)
Mouse (
Mus musculus
)
Dog (
Canis familiaris
)
Chinese softshell turtle (
Pelodiscus sinensis
)
Platyfish (
Xiphophorus maculatus
)
Ferret (
Mustela putorius furo
)
Cat (
Felis catus
)
Rat (
Rattus norvegicus
)
Chicken (
Gallus gallus
)
Caenorhabditis elegans (
Caenorhabditis elegans
)
Duck (
Anas platyrhynchos
)
Flycatcher (
Ficedula albicollis
)
Parental gene description
Retrocopy number
Ignore
<
≤
=
≥
>
Retrocopy number (range):
AND
OR
Ignore
<
≤
≥
>
Parental gene status
Nothing specified
ANNOTATED
KNOWN
KNOWN_BY_PROJECTION
NOVEL
PREDICTED
PUTATIVE
Expressed in
Nothing specified
Adipose
Adrenal
Brain
Breast
Colon
Heart
Kidney
Liver
Lung
Lymph node
Muscle
Ovary
Prostate
Spleen
Testis
Thyroid
Articular cartilage
Ascending colon
Brain prefrontal cortex
Cerebellum
Dewlap
Embryo
Gill
Pectoral fin
Pelvic fin
Pharynx
Placenta
Placental villous
Quadricep muscle
Skeletal muscle
Synovial membrane
Tail muscle
White blood cells
Min. expression
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/home/rosikiewicz/RetrogeneDB2/BETA/search.php
on line
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/home/rosikiewicz/RetrogeneDB2/BETA/search.php
on line
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Order by
Internal MySQL ID
Ensembl accession number
Species (latin name)
Gene symbol
Aliases
Status
Description
Ascending
Descending
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