Parental gene: | ITCH, ENSBTAG00000000308 |
| Aliases: | None |
| Description: | E3 ubiquitin-protein ligase Itchy homolog [Source:RefSeq peptide;Acc:NP_001075897] |
| Organism: | Cow (Bos taurus) |
| Coordinates: | 13:64357861..64462219(+) |
>ENSBTAG00000000308
ATGTCTGACAGTGGATCACAGCTTGGTTCAATGGGTAGTTTGACCATGAAATCACAACTTCAGATCACTGTCATTTCAGC
AAAACTTAAAGAAAATAAAAAGAATTGGTTTGGGCCAAGTCCTTATGTGGAAGTCACAGTAGATGGACAGTCAAAGAAGA
CAGAAAAATGCAACAATACGAACAGTCCCAAATGGAAGCAGCCTCTTACAGTTATTGTCACCCCTGTGAGTAAATTACAT
TTTCGTGTGTGGAGTCACCAGACACTGAAATCTGATGTTTTGTTGGGAACTGCTGGATTGGATATCTATGAAACATTAAA
GTCAAACAATATGAAACTTGAGGAAGTAGTTGTGACTTTACAGCTTGTAGGTGACAAAGAACCAGCAGAGACAATAGGAG
ATTTGTCAGTCTGTCTTGATGGGCTGCAACTAGAGTCTGAAGTTGTTGCCAATGGTGAAACTGCATGTTCAGAAAGTGCT
TCACACAATGATGATGGCTCCAGGCCCAAGGATGAAACAAGAGCGAACGCAAGTGGATCAGATGACCCTGAGGATGCAGG
GTCTGGTGAAAATAGGAGGATCAATGGGAATAATTCTCCATCACTCTCAAATGGCGGTTTTAAACCTTCTAGGCCTCCAA
GACCTTCACGACCACCTCCACCTACCCCACGTAGACCAGCATCTGTCAATGGCTCACCATCTACCACTTCTGAAAGTGAT
GGCTCTAGTACAGGCTCTCTGCCACCAACAAATACAAATTCAAGTACATCTGAAGGAGCAACATCTGGATTAATAATTCC
TCTTACTATATCTGGAGGTGCAGGCCCTAGACCATTAAATCCTATACCTCAAGCTCCCCTCCCACCTGGTTGGGAGCAGA
GAGTGGACCAGCATGGGCGAGTTTACTATGTAGATCATATTGAAAAAAGAACAACGTGGGATAGACCAGAACCTCTACCT
CCTGGCTGGGAGCGGCGGGTTGACAACATGGGACGTATTTATTATGTTGACCATTTCACAAGAACAACAACGTGGCAGAG
GCCAACACTGGAATCAGTCCGGAACTATGAACAATGGCAGCTCCAGCGTAGTCAACTTCAGGGAGCTATGCAGCAGTTTA
ACCAGAGGTTCATTTATGGGAATCAAGATTTGTTTGCTACATCACAAAATAAAGAATTTGATCCCCTGGGTCCCCTGCCG
CCTGGTTGGGAGAAGAGAACGGACAGCAATGGTAGAGTATATTTTGTCAACCACAACACTCGTATTACACAATGGGAAGA
CCCCAGAAATCAAGGTCAATTAAATGAAAAGCCCTTACCTGAAGGCTGGGAAATGAGATTCACGGTAGACGGAATTCCGT
ATTTTGTGGACCACAATAGAAGAACAACCACCTATATAGATCCCCGCACCGGAAAATCTGCCTTAGACAATGGACCCCAG
ATAGCCTATGTACGGGACTTCAAGGCAAAGGTTCAATATTTCCGTTTCTGGTGTCAGCAACTGGCCATGCCACAGCACAT
AAAGATTACAGTGACAAGAAAAACATTGTTTGAGGATTCCTTTCAGCAGATAATGAGCTTCAGTCCTCAAGATCTGCGAA
GACGTTTGTGGGTGATTTTTCCAGGAGAAGAAGGTTTAGATTATGGAGGTGTAGCAAGAGAATGGTTCTTTCTTTTGTCA
CATGAGGTGTTGAACCCAATGTATTGCCTGTTTGAATATGCAGGGAAGGATAACTACTGCTTGCAGATAAACCCCGCTTC
TTACATCAATCCAGATCACCTGAAATATTTTCGTTTTATTGGCAGGTTTATTGCTATGGCTCTGTTCCATGGGAAATTCA
TAGACACAGGTTTTTCTTTGCCATTCTATAAGCGTATCTTGAATAAACCAGTTGGACTGAAGGATTTAGAATCGATTGAT
CCAGAATTTTACAATTCTCTCATCTGGGTTAAAGAGAACAATATTGAGGAGTGTGGTTTGGAAATGTATTTCTCCGTTGA
TAAAGAAATCTTAGGTGAAATCAAGAGTCATGATTTGAAACCCAATGGTGGCAATATTCTTGTAACAGAAGAAAATAAAG
AGGAATATATCAGAATGGTAGCTGAATGGAGATTGTCTCGTGGTGTTGAAGAACAGACGCAAGCTTTCTTTGAGGGCTTT
AATGAAATTCTTCCCCAGCAGTATTTACAGTACTTCGATGCAAAGGAATTAGAGGTTCTTTTATGTGGGATGCAAGAGAT
TGATTTGAATGATTGGCAAAGACATGCCATCTACCGTCACTATACCAGGACAAGTAAACAAATCATGTGGTTTTGGCAGT
TTGTTAAAGAAATCGATAATGAGAAGAGAATGCGACTTTTGCAGTTTGTTACTGGGACCTGCCGACTGCCAGTTGGAGGA
TTTGCTGACCTCATGGGGAGCAATGGGCCACAGAAGTTCTGCATTGAAAAAGTCGGGAAAGAAAATTGGTTGCCTAGAAG
TCATACCTGTTTTAACCGCCTGGACCTGCCACCCTACAAGAGCTATGAGCAACTGAAGGAAAAGCTGTTATTTGCTATTG
AAGAAACAGAAGGCTTTGGACAAGAGTGA
ATGTCTGACAGTGGATCACAGCTTGGTTCAATGGGTAGTTTGACCATGAAATCACAACTTCAGATCACTGTCATTTCAGC
AAAACTTAAAGAAAATAAAAAGAATTGGTTTGGGCCAAGTCCTTATGTGGAAGTCACAGTAGATGGACAGTCAAAGAAGA
CAGAAAAATGCAACAATACGAACAGTCCCAAATGGAAGCAGCCTCTTACAGTTATTGTCACCCCTGTGAGTAAATTACAT
TTTCGTGTGTGGAGTCACCAGACACTGAAATCTGATGTTTTGTTGGGAACTGCTGGATTGGATATCTATGAAACATTAAA
GTCAAACAATATGAAACTTGAGGAAGTAGTTGTGACTTTACAGCTTGTAGGTGACAAAGAACCAGCAGAGACAATAGGAG
ATTTGTCAGTCTGTCTTGATGGGCTGCAACTAGAGTCTGAAGTTGTTGCCAATGGTGAAACTGCATGTTCAGAAAGTGCT
TCACACAATGATGATGGCTCCAGGCCCAAGGATGAAACAAGAGCGAACGCAAGTGGATCAGATGACCCTGAGGATGCAGG
GTCTGGTGAAAATAGGAGGATCAATGGGAATAATTCTCCATCACTCTCAAATGGCGGTTTTAAACCTTCTAGGCCTCCAA
GACCTTCACGACCACCTCCACCTACCCCACGTAGACCAGCATCTGTCAATGGCTCACCATCTACCACTTCTGAAAGTGAT
GGCTCTAGTACAGGCTCTCTGCCACCAACAAATACAAATTCAAGTACATCTGAAGGAGCAACATCTGGATTAATAATTCC
TCTTACTATATCTGGAGGTGCAGGCCCTAGACCATTAAATCCTATACCTCAAGCTCCCCTCCCACCTGGTTGGGAGCAGA
GAGTGGACCAGCATGGGCGAGTTTACTATGTAGATCATATTGAAAAAAGAACAACGTGGGATAGACCAGAACCTCTACCT
CCTGGCTGGGAGCGGCGGGTTGACAACATGGGACGTATTTATTATGTTGACCATTTCACAAGAACAACAACGTGGCAGAG
GCCAACACTGGAATCAGTCCGGAACTATGAACAATGGCAGCTCCAGCGTAGTCAACTTCAGGGAGCTATGCAGCAGTTTA
ACCAGAGGTTCATTTATGGGAATCAAGATTTGTTTGCTACATCACAAAATAAAGAATTTGATCCCCTGGGTCCCCTGCCG
CCTGGTTGGGAGAAGAGAACGGACAGCAATGGTAGAGTATATTTTGTCAACCACAACACTCGTATTACACAATGGGAAGA
CCCCAGAAATCAAGGTCAATTAAATGAAAAGCCCTTACCTGAAGGCTGGGAAATGAGATTCACGGTAGACGGAATTCCGT
ATTTTGTGGACCACAATAGAAGAACAACCACCTATATAGATCCCCGCACCGGAAAATCTGCCTTAGACAATGGACCCCAG
ATAGCCTATGTACGGGACTTCAAGGCAAAGGTTCAATATTTCCGTTTCTGGTGTCAGCAACTGGCCATGCCACAGCACAT
AAAGATTACAGTGACAAGAAAAACATTGTTTGAGGATTCCTTTCAGCAGATAATGAGCTTCAGTCCTCAAGATCTGCGAA
GACGTTTGTGGGTGATTTTTCCAGGAGAAGAAGGTTTAGATTATGGAGGTGTAGCAAGAGAATGGTTCTTTCTTTTGTCA
CATGAGGTGTTGAACCCAATGTATTGCCTGTTTGAATATGCAGGGAAGGATAACTACTGCTTGCAGATAAACCCCGCTTC
TTACATCAATCCAGATCACCTGAAATATTTTCGTTTTATTGGCAGGTTTATTGCTATGGCTCTGTTCCATGGGAAATTCA
TAGACACAGGTTTTTCTTTGCCATTCTATAAGCGTATCTTGAATAAACCAGTTGGACTGAAGGATTTAGAATCGATTGAT
CCAGAATTTTACAATTCTCTCATCTGGGTTAAAGAGAACAATATTGAGGAGTGTGGTTTGGAAATGTATTTCTCCGTTGA
TAAAGAAATCTTAGGTGAAATCAAGAGTCATGATTTGAAACCCAATGGTGGCAATATTCTTGTAACAGAAGAAAATAAAG
AGGAATATATCAGAATGGTAGCTGAATGGAGATTGTCTCGTGGTGTTGAAGAACAGACGCAAGCTTTCTTTGAGGGCTTT
AATGAAATTCTTCCCCAGCAGTATTTACAGTACTTCGATGCAAAGGAATTAGAGGTTCTTTTATGTGGGATGCAAGAGAT
TGATTTGAATGATTGGCAAAGACATGCCATCTACCGTCACTATACCAGGACAAGTAAACAAATCATGTGGTTTTGGCAGT
TTGTTAAAGAAATCGATAATGAGAAGAGAATGCGACTTTTGCAGTTTGTTACTGGGACCTGCCGACTGCCAGTTGGAGGA
TTTGCTGACCTCATGGGGAGCAATGGGCCACAGAAGTTCTGCATTGAAAAAGTCGGGAAAGAAAATTGGTTGCCTAGAAG
TCATACCTGTTTTAACCGCCTGGACCTGCCACCCTACAAGAGCTATGAGCAACTGAAGGAAAAGCTGTTATTTGCTATTG
AAGAAACAGAAGGCTTTGGACAAGAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 99 .44 RPM |
| SRP017611_kidney | 121 .86 RPM |
| SRP017611_liver | 45 .61 RPM |
| ERP005899_muscle | 51 .63 RPM |
| ERP005899_liver | 67 .34 RPM |
| SRP030211_testis | 90 .24 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000011115 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000008780 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_btau_1692 | 97.10 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSBTAG00000000308 retrocopies