Parental gene:

SEPHS1, ENSCAFG00000004743

Aliases:None
Description:Canis lupus familiaris selenophosphate synthetase 1 (SEPHS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001190410]
Organism:Dog (Canis familiaris)
Coordinates:2:23148651..23177174(+)


>ENSCAFG00000004743
ATGTCTACGCGGGAGTCCTTTAACCCGGAAAGTTATGAATTGGACAAGAGCTTCCGGCTAACCAGATTCACTGAACTGAA
GGGCACCGGCTGCAAAGTGCCCCAAGATGTCCTGCAGAAATTGCTGGAATCCTTACAAGAGAATCACTTCCAAGAAGATG
AGCAGTTTCTGGGAGCAGTTATGCCAAGGCTTGGCATTGGAATGGATACTTGCGTCATTCCTTTGAGGCATGGCGGTCTT
TCTTTGGTTCAAACCACGGATTACATTTACCCCATCGTTGATGACCCTTACATGATGGGCAGGATAGCATGTGCCAACGT
CCTCAGTGACCTCTACGCCATGGGGGTCACGGAATGTGACAATATGCTGATGCTCCTTGGGATCAGTAATAAAATGACTG
ACAGGGAGAGGGATAAAGTGATGCCCCTAATTATACAGGGTTTTAAAGATGCAGCAGAGGAGGCGGGAACGTCTGTGACT
GGTGGCCAAACGGTGTTAAACCCCTGGATTGTTCTAGGAGGAGTGGCTACTACTGTCTGCCAGCCCAATGAATTCATCAT
GCCAGATAATGCAGTCCCGGGGGATGTGCTGGTGCTGACGAAGCCCCTGGGGACGCAGGTGGCTGTGGCTGTGCACCAGT
GGCTGGACATTCCTGAAAAATGGAATAAGATCAAGCTAGTGGTCACCCAAGAAGATGTAGAGTTGGCGTACCAGGAGGCG
ATGATGAACATGGCCAGGCTCAACAGAACAGCTGCAGGACTCATGCACACGTTCAATGCCCACGCTGCCACCGACATCAC
GGGCTTTGGGATTTTGGGGCACGCACAGAACCTAGCCAAGCAGCAGAGGAACGAGGTGTCCTTCGTGATTCACAACCTCC
CTGTCCTGGCCAAGATGGCTGCTGTGAGCAAGGCCTGTGGAAACATGTTTGGCCTCATGCATGGGACCTGCCCAGAGACA
TCAGGAGGCCTCCTCATCTGTTTACCACGAGAGCAAGCCGCCCGGTTCTGTGCAGAGATCAAGTCTCCCAAATATGGGGA
GGGCCATCAGGCATGGATTATTGGGATCGTGGAGAAAGGCAACCGCACCGCCAGAATCATAGACAAGCCCCGGATCATCG
AAGTTGCACCGCAGGTGGCCACTCAGAACGTGAACCCCACCCCGGGTGCCACCTCTTAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 153 .72 RPM
SRP017611_brain 59 .86 RPM
SRP017611_kidney 93 .24 RPM
SRP017611_liver 33 .57 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013555 ortholog_one2one 1 retrogene
retro_amel_21,
Callithrix jacchus ENSCJAG00000009494 possible_ortholog 2 retrogenes
retro_cjac_166, retro_cjac_2219,
Loxodonta africana ENSLAFG00000004670 ortholog_one2one 1 retrogene
retro_lafr_125,
Macaca mulatta ENSMMUG00000021233 possible_ortholog 4 retrogenes
retro_mmul_1607, retro_mmul_2495, retro_mmul_2647, retro_mmul_922,
Nomascus leucogenys ENSNLEG00000012205 possible_ortholog 7 retrogenes
retro_nleu_1868, retro_nleu_2211, retro_nleu_234, retro_nleu_2668, retro_nleu_2873, retro_nleu_3004, retro_nleu_327,
Procavia capensis ENSPCAG00000015617 ortholog_one2one 1 retrogene
retro_pcap_341,
Rattus norvegicus ENSRNOG00000018125 possible_ortholog 1 retrogene
retro_rnor_59,
Tursiops truncatus ENSTTRG00000011114 ortholog_one2one 1 retrogene
retro_ttru_649,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_250 95.57 80.36
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2. retro_cfam_1787 82.50 81.63
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Download FASTA sequences of all ENSCAFG00000004743 retrocopies