Parental gene: | NOLC1, ENSCAFG00000010062 |
| Aliases: | None |
| Description: | nucleolar and coiled-body phosphoprotein 1 [Source:HGNC Symbol;Acc:15608] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 28:14686089..14697502(+) |
>ENSCAFG00000010062
ATGGCGGACGCCGGTTTGCGCCGCGTGGTTCCCAGTGACCTGTATCCCCTCGTGCTCGGCTTTCTGCGCGATAACCAGCT
CCCGGAGGTGGCCAATAAATTCGCCAAGGCAACAGGCGCTACCCAACAGGACTCCAACGCCTCTTCCCTCTTGGACATCT
ATAGCTTCTGGCTCAACAGGTCCACCAAGGCCCTGAAGCGGAAGCTACAGGCAAACGGACCAGTGACTAAGAAGGCTAAG
AAGAAGACTTCATCCAGTGACAGCAGTGAGGACAGCAGTGAGGAAGAAAAAGCCCAAGGGCCGCCAGCTAAAAAGACTGT
TGTACCTGCCAAGCGGGCCAGTTTGCCTCAGCATTCTGGAAAGGCTGCAGCCAAAGCAGCAGAGAGCAGCAACAGTGAAG
AATCCAGTGATGAGGAGGAAGAGGACGAGAAGAAAAAGCCTATTCAGAAGGGAGTTAAGCCTCAATCCAAGGCAGTCAAA
CCTCCTTCAAAGAAGGCCAAGAGCTCTGATTCTGATTCAGACTCAAGCTCAGAAGATGAATCACCAAAGAACCAGAAGCC
AAAAACAACACCTGTGGCAGCTAAAGCTCAGGCTAAAGCCTCAGCCAAACCAGGTACACCAGCTCGAGTGGTACCTAAAC
TAGCCAATGGCAAAGCAGCCAGAAGTAAGAGCAGCAGCAGCAGCAGCAGCAGTGATGACTCAGAGGAGGAGGAGGTGGCA
GCGGCCATACCTAAGAAGATTTTACCTAAAAAGCAAGTTGTAGCCAAGTCCCCAGTGAAAGCAGCAGCCACCACTACCCA
AAAGAGTTCCAGCAGTGAGGACTCCTCCAGTGAGGAGGAGGAAGAAGAGGAAGAGCAGAAAAAACCCATGAAGAAAAAAC
CAGGTCCCTATAGTTCAGTCCCCCCACCTTCTGTTGCCCCATCCAAGAAGTCCCTGGGAACTCAGGCTCCCAAGAAAGCC
ACAGAGAAGAAACAGCCTGTGGAGAGCAGTGAGGACAGCAGTGATGAGTCTGATTCGAGTTCAGAGGAAGAAAAGAAACC
CCCAGCTAAAGCAGTCATCTCTAAAGCAACCATTAAACCAGCTCCAGCAAAGAAAGAACCAGAGAGCTCTTCAGACAGCT
CAGACTCTGACAGTTCTGAGGATGAAGCTCCTGCCAAGCCAGCTGGTACCACCAAGAATCTATCATGTAGGCCAGTTACC
ACTCCCAAGCAACCTGCAGCTAAACCAGTCACAGCTCCCAAGCAACCTGCAGGTAGTGGCCAGAAGCCGCTGACCAGAAA
GGCTGATAGCAGCTCCAGTGAAGAGGAGAGCAGCTCTAGTGAAGAGGAGAAAACAAAGAAGACTGTGGTCACCCCCAAGC
CCAAGGCAGTGGCTAAAGCAGTTCCTTCTTTGCCTACCAAACAGGCTTCTCAGGGTGATGGGGACAGCAGCTCTGATTCA
GATAGCTCTAGCAGTGAGGAAGAGAAGATGTCAAAATCCCCAGTTAAAAAGAAGCCACAGAAGGTAGCAAGAGTTGTAGC
CTCTTCCAAGGCAGCTTCCACAAAGAAAGCAAAGGCTGAGAGCAGCAGCAGTTCTTCCTCTGATGATTCCAGTGAGGAAG
AGGAAAAGGAGAAGCCTAAGGGCAAGGGCACTGTAAGGCCACAAGCCCTCAAGACCAATGGGACCTCTGCACTGACTACC
CAGAATGGAAAAGCAGACAGAGATAGCAATGAGGAAGAAGAAGAAAAGAAAAAGGCAGTAGTAGCAGTTTCTAAGCCAGG
TTCAGGGAAGAAGCGGAAGCAGAATGAGGCTGCCAAGGAGGGAGAGACTCCTCAAGCCAAGAAGATAAAGCCCCAGACCC
CCAACACATTTCCAAAAAGGAAGAAAGGAGAGAAAAGGGCATCATCCCCATTCCGAAGGATCAGGGAGGAGGAAATTGAG
GTAGATGCTAGAGTGGCAGACAATTCCTTTGATGCCAAGCGGGGTGCAGCTGGAGACTGGGGGGAGCGCGCCAATCAGGT
TCTGAAGTTCACCAAAGGCAAATCGTTCCGGCATGAGAAAACCAAGAAGAAGCGGGGCAGCTATCGGGGAGGCTCCATCT
CCGTCCAGGTCAATTCCGTTAAGTTTGACAGCGAGTGA
ATGGCGGACGCCGGTTTGCGCCGCGTGGTTCCCAGTGACCTGTATCCCCTCGTGCTCGGCTTTCTGCGCGATAACCAGCT
CCCGGAGGTGGCCAATAAATTCGCCAAGGCAACAGGCGCTACCCAACAGGACTCCAACGCCTCTTCCCTCTTGGACATCT
ATAGCTTCTGGCTCAACAGGTCCACCAAGGCCCTGAAGCGGAAGCTACAGGCAAACGGACCAGTGACTAAGAAGGCTAAG
AAGAAGACTTCATCCAGTGACAGCAGTGAGGACAGCAGTGAGGAAGAAAAAGCCCAAGGGCCGCCAGCTAAAAAGACTGT
TGTACCTGCCAAGCGGGCCAGTTTGCCTCAGCATTCTGGAAAGGCTGCAGCCAAAGCAGCAGAGAGCAGCAACAGTGAAG
AATCCAGTGATGAGGAGGAAGAGGACGAGAAGAAAAAGCCTATTCAGAAGGGAGTTAAGCCTCAATCCAAGGCAGTCAAA
CCTCCTTCAAAGAAGGCCAAGAGCTCTGATTCTGATTCAGACTCAAGCTCAGAAGATGAATCACCAAAGAACCAGAAGCC
AAAAACAACACCTGTGGCAGCTAAAGCTCAGGCTAAAGCCTCAGCCAAACCAGGTACACCAGCTCGAGTGGTACCTAAAC
TAGCCAATGGCAAAGCAGCCAGAAGTAAGAGCAGCAGCAGCAGCAGCAGCAGTGATGACTCAGAGGAGGAGGAGGTGGCA
GCGGCCATACCTAAGAAGATTTTACCTAAAAAGCAAGTTGTAGCCAAGTCCCCAGTGAAAGCAGCAGCCACCACTACCCA
AAAGAGTTCCAGCAGTGAGGACTCCTCCAGTGAGGAGGAGGAAGAAGAGGAAGAGCAGAAAAAACCCATGAAGAAAAAAC
CAGGTCCCTATAGTTCAGTCCCCCCACCTTCTGTTGCCCCATCCAAGAAGTCCCTGGGAACTCAGGCTCCCAAGAAAGCC
ACAGAGAAGAAACAGCCTGTGGAGAGCAGTGAGGACAGCAGTGATGAGTCTGATTCGAGTTCAGAGGAAGAAAAGAAACC
CCCAGCTAAAGCAGTCATCTCTAAAGCAACCATTAAACCAGCTCCAGCAAAGAAAGAACCAGAGAGCTCTTCAGACAGCT
CAGACTCTGACAGTTCTGAGGATGAAGCTCCTGCCAAGCCAGCTGGTACCACCAAGAATCTATCATGTAGGCCAGTTACC
ACTCCCAAGCAACCTGCAGCTAAACCAGTCACAGCTCCCAAGCAACCTGCAGGTAGTGGCCAGAAGCCGCTGACCAGAAA
GGCTGATAGCAGCTCCAGTGAAGAGGAGAGCAGCTCTAGTGAAGAGGAGAAAACAAAGAAGACTGTGGTCACCCCCAAGC
CCAAGGCAGTGGCTAAAGCAGTTCCTTCTTTGCCTACCAAACAGGCTTCTCAGGGTGATGGGGACAGCAGCTCTGATTCA
GATAGCTCTAGCAGTGAGGAAGAGAAGATGTCAAAATCCCCAGTTAAAAAGAAGCCACAGAAGGTAGCAAGAGTTGTAGC
CTCTTCCAAGGCAGCTTCCACAAAGAAAGCAAAGGCTGAGAGCAGCAGCAGTTCTTCCTCTGATGATTCCAGTGAGGAAG
AGGAAAAGGAGAAGCCTAAGGGCAAGGGCACTGTAAGGCCACAAGCCCTCAAGACCAATGGGACCTCTGCACTGACTACC
CAGAATGGAAAAGCAGACAGAGATAGCAATGAGGAAGAAGAAGAAAAGAAAAAGGCAGTAGTAGCAGTTTCTAAGCCAGG
TTCAGGGAAGAAGCGGAAGCAGAATGAGGCTGCCAAGGAGGGAGAGACTCCTCAAGCCAAGAAGATAAAGCCCCAGACCC
CCAACACATTTCCAAAAAGGAAGAAAGGAGAGAAAAGGGCATCATCCCCATTCCGAAGGATCAGGGAGGAGGAAATTGAG
GTAGATGCTAGAGTGGCAGACAATTCCTTTGATGCCAAGCGGGGTGCAGCTGGAGACTGGGGGGAGCGCGCCAATCAGGT
TCTGAAGTTCACCAAAGGCAAATCGTTCCGGCATGAGAAAACCAAGAAGAAGCGGGGCAGCTATCGGGGAGGCTCCATCT
CCGTCCAGGTCAATTCCGTTAAGTTTGACAGCGAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 53 .35 RPM |
| SRP017611_kidney | 43 .32 RPM |
| SRP017611_liver | 22 .55 RPM |
| SRP012049_cerebellum | 79 .13 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000017832 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000166197 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000015012 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000002595 | ortholog_one2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000023882 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000014974 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_1047 | 66.74 | 64.96 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000010062 retrocopies