Parental gene:

TUBB3, ENSCJAG00000010530

Aliases:None
Description:tubulin, beta 3 class III [Source:HGNC Symbol;Acc:20772]
Organism:Marmoset (Callithrix jacchus)
Coordinates:20:44338019..44358208(+)


>ENSCJAG00000010530
ATGCCTATGCAGGGAGCTCAGAGGAAACTCCTGGGGTCCCTCAACTCCACCCCCACAGCCACCTCCAACCCGGGGCTGGC
TGCTAACCACACAGGAGCTCCATGCCTGGAGGTGTCCATCCCCGACGGGCTCTTCCTCAGCCTGGGGCTGGTGAGCTTGG
TGGAGAATGTGCTGGTGGTGGCTGCCATCGCCAAGAACCGCAACCTGCACTCGTCCATGTACTACTTCATCTGCTGCCTG
GCCCTGTCGGACCTGCTGGTGAGCGGCAGCAACATGCTGGAGACGGCCATCATCCTCCTGCTGGAGGCCGGCACGCTGGC
AACCCGGGCCTCAGTGGTGCAGCAGCTGCACAACACCATCGACGTGCTTACCTGCAGCTCCATGCTGTGCAGCCTCTGCT
TCCTGGGCGCCATCGCCGTGGACCGCTACATCTCCATCTTCTACGCGCTGCGCTACCACAGCATCATGACACTGCCGCGG
GCGCAGAGAGCCATCGCGGCCATCTGGGTGGCCAGTGTCCTCTCCAGCACACTGTTCATCACCTACTACGACCACGCGGC
CGTCCTGCTGTGCCTCGTGGTCTTCTTCCTGGCCATGCTGGTGCTCATGGCCGTGCTGTACGTCCACATGCTGGCCCGGG
CCTGCCAGCACGCCCAGGGCATCATCCGGCTCCACAACAGACAGCTGCCAGCCCACAAGGGCTTTGGCCTCAGAGGTGCT
GCCACCCTCACCATCCTGCTGGGCATCTTCTTCCTCTGCTGGGGCCCCTTCTTCCTGCATCTCACACTGGTCGTCTTCTG
CCCCCAGCACCTGACCTGCAACTGTATCTTCAAGAACTTCAAGGTCTTTCTCACCCTCATCATCTGCAACACCATCATCG
ACCCCCTCATCTACGCTTTCCGCAGCCAGGAGCTCCGAAGGACGCTCAAGGAGGTGCTGCTGTGCTCCTCTCTCAGGACC
TGTGCCCTCCTCAGCTGGGATGTGAAGTCTCTGGGTGGAAATGTGTGTCAAGAGCTTCTGAGAGGGAGTGCTCCACAGCA
GCCCCAGGAGAAGGGGCTTTGTGACCGGCTTAGCCACAGTCATGCAGCCGCTCCTGCAGCAGGAAGTGAATTCTGGGAAG
TCATCAGTGACGAGCATGGCATAGACCCCAGTGGCAACTACGTGGGCGACTCTGACTTGCAGCTGGAGCGGATCAGCGTC
TACTACAATGAGGCATCTTCTCACAAGTATGTGCCTCGGGCCATCCTGGTGGACCTGGAGCCTGGGACCATGGACAGCGT
CCGCTCTGGGGCCTTCGGACATCTTTTCAGGCCCGACAACTTCATCTTCGGTCAGAGTGGGGCCGGCAACAACTGGGCCA
AGGGCCACTACACGGAGGGTGCGGAGCTGGTGGATTCGGTCCTGGACGTCGTGCGGAAGGAGTGTGAAAACTGCGACTGC
CTCCAGGGCTTCCAGCTGACCCACTCGCTGGGCGGGGGCACGGGCTCTGGCATGGGCACGCTGCTCATCAGCAAGGTGCG
CGAGGAGTACCCCGACCGCATCATGAACACCTTCAGCGTGGTGCCCTCGCCCAAAGTGTCCGACACGGTGGTGGAGCCTT
ACAACGCCACGCTGTCCATCCACCAGCTGGTGGAGAACACAGATGAGACCTACTGCATCGACAACGAGGCGCTCTACGAC
ATCTGCTTCCGCACCCTCAAGCTGGCCACGCCCACCTACGGGGACCTCAACCACCTGGTGTCGGCCACCATGAGCGGGGT
GACCACCTCGCTGCGCTTCCCAGGGCAGCTCAACGCCGACCTGCGCAAGCTGGCAGTGAACATGGTGCCCTTCCCCCGCC
TGCACTTCTTCATGCCCGGCTTCGCGCCCCTCACGGCCCGGGGCAGCCAGCAGTACCGGGCCCTGACCGTGCCCGAGCTC
ACCCAGCAGATGTTTGACGCCAAGAACATGATGGCCGCCTGCGACCCACGCCACGGCCGCTACCTGACCGTGGCCACTGT
GTTCCGGGGCCGCATGTCCATGAAGGAGGTGGACGAGCAGATGCTGGCCATCCAGAGCAAGAACAGCAGCTACTTCGTGG
AGTGGATCCCCAACAATGTGAAGGTGGCCGTGTGCGACATCCCGCCCCGCGGCCTCAAGATGTCCTCCACCTTCATCGGC
AACAGCACGGCCATCCAGGAGCTGTTCAAGCGCATCTCTGAGCAGTTCACGGCCATGTTCCGGCGCAAGGCCTTCCTACA
CTGGTACACGGGCGAGGGCATGGACGAGATGGAGTTCACCGAGGCTGAGAGCAACATGAACGACCTGGTGTCCGAGTACC
AGCAGTACCAGGACGCCACGGCTGAGGAGGAGGGCGAGATGTATGAAGATGACGACGAGGAGTCGGAGGCCCAGGGCCCG
AAG

Library Parental gene expression (RPM)
SRP051959_colon 0 .67 RPM
SRP051959_heart 1 .11 RPM
SRP051959_kidney 0 .29 RPM
SRP051959_liver 0 .26 RPM
SRP051959_lung 0 .65 RPM
SRP051959_lymph_node 0 .91 RPM
SRP051959_skeletal_muscle 0 .22 RPM
SRP051959_spleen 0 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000004826 within_species_paralog 2 retrogenes
retro_cjac_1632, retro_cjac_2667,
Callithrix jacchus ENSCJAG00000010101 other_paralog 1 retrogene
retro_cjac_800,
Callithrix jacchus ENSCJAG00000011697 other_paralog 1 retrogene
retro_cjac_3284,
Callithrix jacchus ENSCJAG00000017637 within_species_paralog 1 retrogene
retro_cjac_1649,
Homo sapiens ENSG00000258947 possible_ortholog 1 retrogene
retro_hsap_155,
Gorilla gorilla ENSGGOG00000002192 ortholog_one2one 1 retrogene
retro_ggor_2364,
Nomascus leucogenys ENSNLEG00000015940 ortholog_one2one 1 retrogene
retro_nleu_3106,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1144 90.57 54.18
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Download FASTA sequences of all ENSCJAG00000010530 retrocopies