Parental gene: | KARS, ENSCJAG00000014213 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 20:29585580..29604018(-) |
>ENSCJAG00000014213
ATGTTGACGCAAGCTGCTGTAAGGCTTGTTAGGGGGTCCGTGCGCAAAACCTCCTGGGCGGAGTGGGGTCACAGGGGACT
GCGACTGGGTCAACTTGCTCCTTGGACAGCGCCTCACAAGGACAAGCCATTTTCTGATCAAAGAAGTGAGCTGAAGAGAC
GCCTGAAAGCTGAGAAGAAAGTAGCAGAGAAGGAGGCCAAGCAGAAAGAGCTTAGTGAGAAACAGCTAAGCCAAGCCACC
GCTGCTGCCACCAACCACACTGCTGACAATGGTGTGGGTCCTGAGGAAGAGAGCCTGGACCCAAATCAATACTACAAAAT
CCGCAGTCAAGCAATTCATCAGCTGAAGGTCAGTGGGGAAGACCCATACCCACACAAGTTCCATGTAGACATCTCACTCA
CCGACTTCATCCAAGAATATAGTCACCTGCAGCCTGGGGATCACCTGACTGACATCACCTTAAGGGTGGCAGGTAGGATT
CATGCCAAAAGAGCTTCTGGGGGAAAGCTTATCTTCTATGATCTTCGAGGAGAGGGGGTGAAGTTGCAAGTCATGGCCAA
TTCCAGAAATTATAAATCAGAAGAAGAATTTATTCATATTAATAACAAACTGCGTCGGGGAGACATAATTGGAGTTCAGG
GGAATCCTGGGAAGACCAAGAAGGGTGAACTGAGCATCATTCCGTATGAGATCACACTGCTGTCTCCCTGTTTGCATATG
TTACCTCATCTTCACTTTGGCCTCAAAGACAAGGAAACAAGGTATCGCCAGAGATACCTGGACTTGATCCTGAATGACTT
CGTGAGGCAGAAATTTATCACCCGCTCTAAGATCATCACATATATAAGAAGTTTTATGGATGAGCTGGGATTCCTGGAGA
TTGAAACTCCCATGATGAACATCATCCCAGGGGGAGCTGTGGCCAAGCCTTTCATCACTTATCACAATGAGCTGGACATG
AACTTATATATGAGAATTGCTCCAGAACTCTACCATAAGATGCTCGTGGTTGGTGGCATCGATCGGGTTTATGAAATTGG
ACGCCAGTTCCGGAATGAGGGGATTGATTTGACACACAATCCTGAGTTCACCACCTGTGAGTTCTACATGGCCTATGCAG
ACTATCACGATCTCATGGAAATCACGGAGAAAATGGTTTCAGGGATGGTGAAGCATATTACAGGCGGTTATAAAGTCACC
TACCACCCAGATGGCCCAGAGGGCCAGGCCTATGAAATTGACTTCACCCCACCCTTCCGGAGAATCAGCATGATAGAAGA
GCTTGAGAAAGCCCTGGGGATGAAGCTGCCAGAAACTAACCTCTTTGAAACTGAAGAAACTCGCAAAATTCTTGATGATA
TCTGTGTGGCAAAAGCTGTCGAATGCCCTCCACCTCGGACCACAGCCAGGCTCCTTGACAAGCTTGTAGGGGAGTTCCTG
GAAGTAACTTGCATCAATCCTACGTTCATCTGTGATCACCCACAGATAATGAGCCCTTTGGCTAAATGGCACCGCTCTAA
AGAGGGTCTGACGGAGCGCTTTGAGCTATTTGTCATGAAGAAAGAGATATGTAATGCCTACACTGAGCTGAATGATCCCA
TGCGGCAGCGGCAGCTTTTTGAAGAACAGGCCAAGGCCAAGGCTGCAGGTGATGATGAGGCCATGTTCATAGATGAAAAC
TTCTGTACCGCCCTGGAATATGGGCTGCCCCCCACGGCTGGCTGGGGCATGGGCATTGACCGAGTCGCCATGTTTCTCAC
AGACTCCAACAACATCAAGGAAGTACTTCTGTTTCCTGCTATGAAACCTGAAGACAAGAAGGAGAATGTAGCACCCACTG
AGACGCTGGAAAGTACAGCAGTTGGCACTTCTGTCTAG
ATGTTGACGCAAGCTGCTGTAAGGCTTGTTAGGGGGTCCGTGCGCAAAACCTCCTGGGCGGAGTGGGGTCACAGGGGACT
GCGACTGGGTCAACTTGCTCCTTGGACAGCGCCTCACAAGGACAAGCCATTTTCTGATCAAAGAAGTGAGCTGAAGAGAC
GCCTGAAAGCTGAGAAGAAAGTAGCAGAGAAGGAGGCCAAGCAGAAAGAGCTTAGTGAGAAACAGCTAAGCCAAGCCACC
GCTGCTGCCACCAACCACACTGCTGACAATGGTGTGGGTCCTGAGGAAGAGAGCCTGGACCCAAATCAATACTACAAAAT
CCGCAGTCAAGCAATTCATCAGCTGAAGGTCAGTGGGGAAGACCCATACCCACACAAGTTCCATGTAGACATCTCACTCA
CCGACTTCATCCAAGAATATAGTCACCTGCAGCCTGGGGATCACCTGACTGACATCACCTTAAGGGTGGCAGGTAGGATT
CATGCCAAAAGAGCTTCTGGGGGAAAGCTTATCTTCTATGATCTTCGAGGAGAGGGGGTGAAGTTGCAAGTCATGGCCAA
TTCCAGAAATTATAAATCAGAAGAAGAATTTATTCATATTAATAACAAACTGCGTCGGGGAGACATAATTGGAGTTCAGG
GGAATCCTGGGAAGACCAAGAAGGGTGAACTGAGCATCATTCCGTATGAGATCACACTGCTGTCTCCCTGTTTGCATATG
TTACCTCATCTTCACTTTGGCCTCAAAGACAAGGAAACAAGGTATCGCCAGAGATACCTGGACTTGATCCTGAATGACTT
CGTGAGGCAGAAATTTATCACCCGCTCTAAGATCATCACATATATAAGAAGTTTTATGGATGAGCTGGGATTCCTGGAGA
TTGAAACTCCCATGATGAACATCATCCCAGGGGGAGCTGTGGCCAAGCCTTTCATCACTTATCACAATGAGCTGGACATG
AACTTATATATGAGAATTGCTCCAGAACTCTACCATAAGATGCTCGTGGTTGGTGGCATCGATCGGGTTTATGAAATTGG
ACGCCAGTTCCGGAATGAGGGGATTGATTTGACACACAATCCTGAGTTCACCACCTGTGAGTTCTACATGGCCTATGCAG
ACTATCACGATCTCATGGAAATCACGGAGAAAATGGTTTCAGGGATGGTGAAGCATATTACAGGCGGTTATAAAGTCACC
TACCACCCAGATGGCCCAGAGGGCCAGGCCTATGAAATTGACTTCACCCCACCCTTCCGGAGAATCAGCATGATAGAAGA
GCTTGAGAAAGCCCTGGGGATGAAGCTGCCAGAAACTAACCTCTTTGAAACTGAAGAAACTCGCAAAATTCTTGATGATA
TCTGTGTGGCAAAAGCTGTCGAATGCCCTCCACCTCGGACCACAGCCAGGCTCCTTGACAAGCTTGTAGGGGAGTTCCTG
GAAGTAACTTGCATCAATCCTACGTTCATCTGTGATCACCCACAGATAATGAGCCCTTTGGCTAAATGGCACCGCTCTAA
AGAGGGTCTGACGGAGCGCTTTGAGCTATTTGTCATGAAGAAAGAGATATGTAATGCCTACACTGAGCTGAATGATCCCA
TGCGGCAGCGGCAGCTTTTTGAAGAACAGGCCAAGGCCAAGGCTGCAGGTGATGATGAGGCCATGTTCATAGATGAAAAC
TTCTGTACCGCCCTGGAATATGGGCTGCCCCCCACGGCTGGCTGGGGCATGGGCATTGACCGAGTCGCCATGTTTCTCAC
AGACTCCAACAACATCAAGGAAGTACTTCTGTTTCCTGCTATGAAACCTGAAGACAAGAAGGAGAATGTAGCACCCACTG
AGACGCTGGAAAGTACAGCAGTTGGCACTTCTGTCTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 32 .86 RPM |
| SRP051959_skeletal_muscle | 93 .95 RPM |
| SRP051959_lymph_node | 35 .57 RPM |
| SRP051959_lung | 32 .99 RPM |
| SRP051959_liver | 42 .04 RPM |
| SRP051959_kidney | 35 .70 RPM |
| SRP051959_heart | 37 .71 RPM |
| SRP051959_colon | 29 .71 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000013447 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000065427 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000005515 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000031948 | ortholog_one2one | 8 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000013072 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000007567 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000008364 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000006746 | ortholog_one2one | 2 retrogenes | |
| Sorex araneus | ENSSARG00000011493 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_608 | 97.99 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_4104 | 82.39 | 81.74 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000014213 retrocopies