Parental gene: | VPS35, ENSCPOG00000003773 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_33:6997641..7023112(+) |
>ENSCPOG00000003773
CAGCCTACAACACAGCAGTCACCTCAGGATGAACAGGAGAAACTCCTGGATGAAGCCATACAGGCTGTAAAGGTTCAGTC
CTTCCAGATGAAGAGATGCTTGGACAAAAACAAGCTTATGGATGCTCTAAAACATGCATCTAATATGCTTGGTGAACTCC
GGACTTCTATGTTATCACCAAAGAGCTACTATGAACTTTATATGGCTATTTCTGATGAACTGCACTATTTGGAGGTCTAC
CTGACAGATGAGTTTGCTAAAGGAAGGAAAGTGGCAGATCTCTATGAACTGGTACAATATGCTGGAAACATTATCCCAAG
GCTTTATCTGTTGATCACAGTTGGAGTTGTGTATGTCAAGTCATTTCATCAATCCAGGAAAGATATTTTGAAAGATTTGG
TAGAAATGTGCCGAGGTGTACAGCATCCACTGAGGGGTTTATTTCTTCGAAATTACCTTCTTCAGTGTACCAGAAACATT
TTACCTGATGAAGGAGAGCCAACAGATGAGGAAACAACTGGGGATATCAGTGACTCCATGGATTTTGTGCTCCTCAACTT
TGCAGAAATGAACAAGCTTTGGGTGCGGATGCAGCACCAAGGACACAGCCGAGATAGAGAAAAAAGAGAACGAGAAAGAC
AAGAGCTGAGAATTTTAGTAGGGACAAATTTGGTGCGCCTCAGTCAGTTGGAAGGCGTAAATGTGGAACGTTACAAGCAG
ATTGTTTTAACTGGCATATTGGAGCAGGTTGTGAATTGTAGGGATGCTTTGGCTCAAGAATATCTCATGGAGTGTATTAT
TCAGGTTTTTCCTGATGAATTCCACCTCCAGACTTTGAATCCTTTTCTTCGGGCCTGTGCTGAGTTACACCAAAATGTAA
ATGTGAAAAATATAATCATTGCTTTAATTGATAGATTAGCTTTATTTGCTCATCGTGAAGATGGACCTGGGATTCCAGCA
GATATCAAACTTTTTGATATATTTTCACAGCAGGTGGCCACAGTGATACAGTCTAGACAAGACATGCCTTCCGAGGATGT
TGTATCTTTACAAGTGTCGCTCATTAAGCTTGCCATGAAATGTTACCCTGATCGTGTGGACTATGTGGATAAAGTTCTAG
AAACAACGGTGGAGATATTCAACAAGCTCAACCTTGAACATATTGCTACCAGTAGTGCAGTTTCAAAGGAACTCACCAGA
CTTTTGAAGATACCTGTTGATACTTACAACAATATTTTGACCGTCTTGAAATTGAAACATTTCCACCCACTATTTGAGTA
CTTTGACTATGAGTCCAGAAAGAGTATGAGTTGTTATGTGCTTAGTAATGTTCTGGATTATAATACAGAAATTGTCTCTC
AAGACCAGGTGGATTCCATAATGAATTTGGTGTCCACATTGATTCAAGATCAGCCAGATCAACCTGTGGAAGACCCTGAT
CCAGAAGACTTTGCAGATGAGCAGAGCCTTGTGGGCCGATTCATTCATCTTCTTCGGTCTGAGGACCCTGATCAGCAGTA
CTTGATCTTAAATACAGCACGAAAGCATTTTGGAGCTGGTGGAAATCAGCGGATTCGCTTCACACTGCCACCTTTGGTGT
TTGCTGCTTACCAGCTGGCTTTTCGATACAAAGAGAATTCTAAAGTGGATGACAAATGGGAAAAAAAATGCCAGAAGATC
TTTTCATTTGCTCACCAAACTATTAGTGCTTTGATCAAAGCAGAGCTGGCAGAATTACCCTTAAGACTTTTTCTTCAGGG
AGCCCTAGCTGCTGGCGAGATTGGCTTTGAAAATCATGAAACAGTAGCATATGAATTTATGTCCCAGGCATTTTCCCTGT
ATGAAGATGAAATCAGTGATTCCAAAGCACAGCTGGCTGCCATCACATTGATTATTGGTACTTTTGAAAGGATGAAATGC
TTCAGTGAAGAGAATCATGAACCCTTGAGAACTCAGTGTGCACTTGCTGCATCCAAACTTCTAAAAAAGCCCGATCAGGG
CCGAGCTGTGAGCACCTGTGCACATCTCTTCTGGTCCGGCAGAAACACAGACAAAAATGGAGAGGAGCTTCATGGAGGGA
AGAGGGTCATGGAGTGCCTAAAGAAAGCTCTAAAAATAGCAAATCAGTGCATGGACCCCTCTCTACAAGTGCAACTTTTT
ATAGAAATTCTGAACAGATATATCTATTTTTATGAAAAGGAAAATGATGCGGTAACAATTCAGGTGTTGAATCAGCTTAT
CCAAAAGATTCGAGAAGACCTCCCAAACCTTGAGTCCGGTGAAGAAACAGAGCAGATTAACAAACATTTTCATAACACAC
TAGAGCATTTGCGTTTGAGGCGGGAATCACCAGAGTCTGAGGGTCCAATTTATGAAGGTCTTGTCCTT
CAGCCTACAACACAGCAGTCACCTCAGGATGAACAGGAGAAACTCCTGGATGAAGCCATACAGGCTGTAAAGGTTCAGTC
CTTCCAGATGAAGAGATGCTTGGACAAAAACAAGCTTATGGATGCTCTAAAACATGCATCTAATATGCTTGGTGAACTCC
GGACTTCTATGTTATCACCAAAGAGCTACTATGAACTTTATATGGCTATTTCTGATGAACTGCACTATTTGGAGGTCTAC
CTGACAGATGAGTTTGCTAAAGGAAGGAAAGTGGCAGATCTCTATGAACTGGTACAATATGCTGGAAACATTATCCCAAG
GCTTTATCTGTTGATCACAGTTGGAGTTGTGTATGTCAAGTCATTTCATCAATCCAGGAAAGATATTTTGAAAGATTTGG
TAGAAATGTGCCGAGGTGTACAGCATCCACTGAGGGGTTTATTTCTTCGAAATTACCTTCTTCAGTGTACCAGAAACATT
TTACCTGATGAAGGAGAGCCAACAGATGAGGAAACAACTGGGGATATCAGTGACTCCATGGATTTTGTGCTCCTCAACTT
TGCAGAAATGAACAAGCTTTGGGTGCGGATGCAGCACCAAGGACACAGCCGAGATAGAGAAAAAAGAGAACGAGAAAGAC
AAGAGCTGAGAATTTTAGTAGGGACAAATTTGGTGCGCCTCAGTCAGTTGGAAGGCGTAAATGTGGAACGTTACAAGCAG
ATTGTTTTAACTGGCATATTGGAGCAGGTTGTGAATTGTAGGGATGCTTTGGCTCAAGAATATCTCATGGAGTGTATTAT
TCAGGTTTTTCCTGATGAATTCCACCTCCAGACTTTGAATCCTTTTCTTCGGGCCTGTGCTGAGTTACACCAAAATGTAA
ATGTGAAAAATATAATCATTGCTTTAATTGATAGATTAGCTTTATTTGCTCATCGTGAAGATGGACCTGGGATTCCAGCA
GATATCAAACTTTTTGATATATTTTCACAGCAGGTGGCCACAGTGATACAGTCTAGACAAGACATGCCTTCCGAGGATGT
TGTATCTTTACAAGTGTCGCTCATTAAGCTTGCCATGAAATGTTACCCTGATCGTGTGGACTATGTGGATAAAGTTCTAG
AAACAACGGTGGAGATATTCAACAAGCTCAACCTTGAACATATTGCTACCAGTAGTGCAGTTTCAAAGGAACTCACCAGA
CTTTTGAAGATACCTGTTGATACTTACAACAATATTTTGACCGTCTTGAAATTGAAACATTTCCACCCACTATTTGAGTA
CTTTGACTATGAGTCCAGAAAGAGTATGAGTTGTTATGTGCTTAGTAATGTTCTGGATTATAATACAGAAATTGTCTCTC
AAGACCAGGTGGATTCCATAATGAATTTGGTGTCCACATTGATTCAAGATCAGCCAGATCAACCTGTGGAAGACCCTGAT
CCAGAAGACTTTGCAGATGAGCAGAGCCTTGTGGGCCGATTCATTCATCTTCTTCGGTCTGAGGACCCTGATCAGCAGTA
CTTGATCTTAAATACAGCACGAAAGCATTTTGGAGCTGGTGGAAATCAGCGGATTCGCTTCACACTGCCACCTTTGGTGT
TTGCTGCTTACCAGCTGGCTTTTCGATACAAAGAGAATTCTAAAGTGGATGACAAATGGGAAAAAAAATGCCAGAAGATC
TTTTCATTTGCTCACCAAACTATTAGTGCTTTGATCAAAGCAGAGCTGGCAGAATTACCCTTAAGACTTTTTCTTCAGGG
AGCCCTAGCTGCTGGCGAGATTGGCTTTGAAAATCATGAAACAGTAGCATATGAATTTATGTCCCAGGCATTTTCCCTGT
ATGAAGATGAAATCAGTGATTCCAAAGCACAGCTGGCTGCCATCACATTGATTATTGGTACTTTTGAAAGGATGAAATGC
TTCAGTGAAGAGAATCATGAACCCTTGAGAACTCAGTGTGCACTTGCTGCATCCAAACTTCTAAAAAAGCCCGATCAGGG
CCGAGCTGTGAGCACCTGTGCACATCTCTTCTGGTCCGGCAGAAACACAGACAAAAATGGAGAGGAGCTTCATGGAGGGA
AGAGGGTCATGGAGTGCCTAAAGAAAGCTCTAAAAATAGCAAATCAGTGCATGGACCCCTCTCTACAAGTGCAACTTTTT
ATAGAAATTCTGAACAGATATATCTATTTTTATGAAAAGGAAAATGATGCGGTAACAATTCAGGTGTTGAATCAGCTTAT
CCAAAAGATTCGAGAAGACCTCCCAAACCTTGAGTCCGGTGAAGAAACAGAGCAGATTAACAAACATTTTCATAACACAC
TAGAGCATTTGCGTTTGAGGCGGGAATCACCAGAGTCTGAGGGTCCAATTTATGAAGGTCTTGTCCTT
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 43 .27 RPM |
| SRP017611_kidney | 75 .48 RPM |
| SRP017611_brain | 82 .65 RPM |
| SRP040447_lung | 81 .41 RPM |
| SRP040447_skeletal_muscle | 26 .89 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000002493 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000010203 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_880 | 95.79 | 62.56 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000003773 retrocopies