Parental gene: | HN1L, ENSCPOG00000005352 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_4:21784937..21799074(+) |
>ENSCPOG00000005352
ATGTTCCAGGGTGTGGATGGCGAGGCTGGCCGGGCAGGTTCCAGGGCCATGAAACCCCCAGGAGGAGAATCTAGCAATCT
TTTTGGAAGTCTGGAAGAAGCTGTTCCTTCAAATAGGCCTAACAGGATGGCATCTAATATTTTTGGACCAACTGAAGAAC
CTCAGAACATACCCAAGAGGACAAATCCCCCAGGTGGTAAAGGAAGTGGAATCTTTGATGAATCAACTCCTGTGCAGACC
CGACAACGTCTGAATCCACCTGGTGGAAAGGCCAGTGACATTTTTGGTTCCCCAGTCACTGCAGCTTCACCGTTGGCACA
CCCAAACAAACCCAAGGACCACATTCTTTTGTGTGAAGGAGAGGACCCAAAATCAGACCTTAAAGCTGCAACAAGCACCT
CACCACAAGACGAGCTGGGGACAAAGGGCAGCTCGAGAGAAGTGGACCATACCAAGGAGTTGGAGCCCATGCCTACAGTC
GACAACCATGAGCCCAGGCTGGGGCCACGGCCTCGCTCTCATAACAAGGTCCTGAACCCACCCGGAGGCAAATCCAGCAT
CTCCTTCTACTGA
ATGTTCCAGGGTGTGGATGGCGAGGCTGGCCGGGCAGGTTCCAGGGCCATGAAACCCCCAGGAGGAGAATCTAGCAATCT
TTTTGGAAGTCTGGAAGAAGCTGTTCCTTCAAATAGGCCTAACAGGATGGCATCTAATATTTTTGGACCAACTGAAGAAC
CTCAGAACATACCCAAGAGGACAAATCCCCCAGGTGGTAAAGGAAGTGGAATCTTTGATGAATCAACTCCTGTGCAGACC
CGACAACGTCTGAATCCACCTGGTGGAAAGGCCAGTGACATTTTTGGTTCCCCAGTCACTGCAGCTTCACCGTTGGCACA
CCCAAACAAACCCAAGGACCACATTCTTTTGTGTGAAGGAGAGGACCCAAAATCAGACCTTAAAGCTGCAACAAGCACCT
CACCACAAGACGAGCTGGGGACAAAGGGCAGCTCGAGAGAAGTGGACCATACCAAGGAGTTGGAGCCCATGCCTACAGTC
GACAACCATGAGCCCAGGCTGGGGCCACGGCCTCGCTCTCATAACAAGGTCCTGAACCCACCCGGAGGCAAATCCAGCAT
CTCCTTCTACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 7 .05 RPM |
| SRP017611_kidney | 19 .05 RPM |
| SRP017611_brain | 10 .87 RPM |
| SRP040447_lung | 26 .13 RPM |
| SRP040447_skeletal_muscle | 8 .06 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000008232 | ortholog_one2one | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000007521 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000008873 | ortholog_one2one | 4 retrogenes | |
| Mus musculus | ENSMUSG00000024165 | ortholog_one2one | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000015551 | ortholog_one2many | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000016673 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000024661 | ortholog_one2many | 2 retrogenes | |
| Sorex araneus | ENSSARG00000012440 | ortholog_one2one | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000012700 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000011377 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_749 | 55.12 | 65.26 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cpor_892 | 72.09 | 66.32 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000005352 retrocopies