Parental gene:

HN1L, ENSCPOG00000005352

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_4:21784937..21799074(+)


>ENSCPOG00000005352
ATGTTCCAGGGTGTGGATGGCGAGGCTGGCCGGGCAGGTTCCAGGGCCATGAAACCCCCAGGAGGAGAATCTAGCAATCT
TTTTGGAAGTCTGGAAGAAGCTGTTCCTTCAAATAGGCCTAACAGGATGGCATCTAATATTTTTGGACCAACTGAAGAAC
CTCAGAACATACCCAAGAGGACAAATCCCCCAGGTGGTAAAGGAAGTGGAATCTTTGATGAATCAACTCCTGTGCAGACC
CGACAACGTCTGAATCCACCTGGTGGAAAGGCCAGTGACATTTTTGGTTCCCCAGTCACTGCAGCTTCACCGTTGGCACA
CCCAAACAAACCCAAGGACCACATTCTTTTGTGTGAAGGAGAGGACCCAAAATCAGACCTTAAAGCTGCAACAAGCACCT
CACCACAAGACGAGCTGGGGACAAAGGGCAGCTCGAGAGAAGTGGACCATACCAAGGAGTTGGAGCCCATGCCTACAGTC
GACAACCATGAGCCCAGGCTGGGGCCACGGCCTCGCTCTCATAACAAGGTCCTGAACCCACCCGGAGGCAAATCCAGCAT
CTCCTTCTACTGA

Library Parental gene expression (RPM)
SRP017611_brain 10 .87 RPM
SRP017611_kidney 19 .05 RPM
SRP017611_liver 7 .05 RPM
SRP040447_lung 26 .13 RPM
SRP040447_skeletal_muscle 8 .06 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008232 ortholog_one2one 1 retrogene
retro_amel_1019,
Dipodomys ordii ENSDORG00000007521 ortholog_one2one 1 retrogene
retro_dord_269,
Macropus eugenii ENSMEUG00000008873 ortholog_one2one 4 retrogenes
retro_meug_1471, retro_meug_1628, retro_meug_189, retro_meug_258,
Mus musculus ENSMUSG00000024165 ortholog_one2one 3 retrogenes
retro_mmus_1204, retro_mmus_655, retro_mmus_709,
Oryctolagus cuniculus ENSOCUG00000015551 ortholog_one2many 1 retrogene
retro_ocun_275,
Pteropus vampyrus ENSPVAG00000016673 ortholog_one2one 1 retrogene
retro_pvam_99,
Rattus norvegicus ENSRNOG00000024661 ortholog_one2many 2 retrogenes
retro_rnor_25, retro_rnor_560,
Sorex araneus ENSSARG00000012440 ortholog_one2one 1 retrogene
retro_sara_335,
Sarcophilus harrisii ENSSHAG00000012700 ortholog_one2one 1 retrogene
retro_shar_184,
Tursiops truncatus ENSTTRG00000011377 ortholog_one2one 1 retrogene
retro_ttru_429,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_749 55.12 65.26
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2. retro_cpor_892 72.09 66.32
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Download FASTA sequences of all ENSCPOG00000005352 retrocopies