Parental gene:

KIAA0020, ENSCPOG00000008552

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_21:16990701..17020237(+)


>ENSCPOG00000008552
AGAGTTGCCATGGTGAAAGTCAAAGGGGATAAAAAGCTCACAGGAAGGAATACAATGGCTTCACAAGAAAAAAACAAATT
TCAGAAACACAGTGCTTCTAGTTCTTCAAAGACATTCCTCAAGAAAGATGTTAAGGAGGAGAGACCTAAAGTTACATCTA
AGAAGTTTGAGAAAAGTGCCACAAAACCTGGGAAAAAGGGTGTGAAACAGTTCAAGAATAAGCCACAAGGGGACAAAGGA
CTGAAGAACAAACTCCAGCAGGCAAATAAGTTCAACAAGAAGAGAAAGTTTCAGCCGGACGGTAAAAGTAGCGAATCAGC
ATCCAAGAAAACCAAATGGGATGACTTCAAAAAAAAGAAGAGAGAACTAAAGCAGAGCAGACAGCTCAGTGACAAAACCA
ACTATGACATTGTTGTTCAAGCCAAACAGATTTGGGAGATCTTAAGAAGAAAAGATTGTGACAAAGAAAAAAGAGCGAAG
TTGATGAGTGATTTACAGAAGTTGATTCAAGGGAAAATTAAAACTATCGCGTTTGCTCATGATTCGACCCGTGTGATCCA
GTGTTATATTCAGTATGGTAATGAAGAACAGAGAAGACAGGCTTTTGAAGAATTACGAGATGATTTGGTTGAATTAAGTA
AAGCCAAATATTCCAGAAATATTGTTAAGAAATTTCTCATGTATGGAAGTAAACCACAGATTGCAGAGATAATCAGAAGC
TTCAAAGGCCACGTGAGGAAGATGCTGCGGCATGCGGAAGCCTCTGCCATCGTAGAGTATGCATATAATGACAAGGCCAT
TCTGGAGCAGAGGAACATGCTGACCGAAGAGCTCTATGGGAACACGTTTCAGCTTTACAAGTCTACAGAACATTCTACTC
TGGACAAGGTATTAGAGGTACAGCCAGAAAAATTAGAGCTCATTATGGATGAAATGAAACAGATTCTAACTCCAATGGCT
CAAAAGGAAGCTGTGATTAAGCATTCATTAGTCCATAAAGTATTCTTGGATTTTTTTACCCATGCAACCCCAAAACTCAG
ATCTGAACTGATTGAAGCCATCCGGGAAGCGGTGGTGTACCTGGCACACACACACGATGGTGCCAGGGTGGCTATGCACT
GCTTGTGGCATGGCACACCCAAGGACAGAAAAGTAATTGTGAAGACAATGAAGAGTTACATTGAAAAAGTGGCTAATGGC
CAGTACTCTCACTTGGTTTTGCTGGCAGCATTTGATTGTATTGATGATACTAAGCTTGTGAAGCAGATAATCATATCAGA
AATTATCAGTTCCTTGTCTAACATAGTAAATGACAAATACGGAAGGAAAGTCTTGTTGTATTTACTGAGTCCCAGGGATC
CTGCACATATAGTCCGAGAAATCATTGAAGTTCTGCAGAAAGGAGATGGAAATGCACACAGTAAGAAAGATACAGAGATC
CGCCGTCGTGAGCTCTTAGAAGCTATTTCTCCAGCATTGTTAAAGCATCTACAAGGAAATGCCCAGGAGATGGTGCTGGA
TAAGTCTGCATGTGTGCTGGTGCCTGCCATTCTGGGCTCTGCCACTGGAGACGTTCAGCCTGCCATGGATGCCATCGCCA
GCCTCGCGGCAGCAGAATTACACCCTAGTGGCAAGGATGGAGAGCTTCATGTTGCGGAACATCCTGCAGGACATCTAGTT
TTGAAGTGGCTGATAGAGCAAGACAAAAAGATGAAAGAAAATGGAAGAGAAGGTTGTTTTGCAAAAACCCTTGTAGACCA
TGTTGGTATGAAGAACCTGAAGTCCTGGACTAGTATAAATCGGGGTGCCATCATTCTTTCCAGCCTTCTACAGAGTACAG
ACCAAGAAGTTGCAAATACAGTTAGAGCTGGACTGAAAAGCCTGATTCCCACGTTGGAAAAAAACAAAAACACCAGCAAA
GGAATAGAAATTCTACTTGAAAAACTGACT

Library Parental gene expression (RPM)
SRP017611_brain 10 .53 RPM
SRP017611_kidney 15 .91 RPM
SRP017611_liver 8 .75 RPM
SRP040447_lung 13 .19 RPM
SRP040447_skeletal_muscle 5 .61 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012187 ortholog_one2one 1 retrogene
retro_amel_1752,
Callithrix jacchus ENSCJAG00000010917 ortholog_one2many 1 retrogene
retro_cjac_2253,
Loxodonta africana ENSLAFG00000017341 ortholog_one2one 1 retrogene
retro_lafr_1029,
Mus musculus ENSMUSG00000041360 ortholog_one2one 1 retrogene
retro_mmus_3640,
Oryctolagus cuniculus ENSOCUG00000004189 ortholog_one2many 1 retrogene
retro_ocun_213,
Sorex araneus ENSSARG00000000579 ortholog_one2one 1 retrogene
retro_sara_499,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_1158 82.20 57.85
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Download FASTA sequences of all ENSCPOG00000008552 retrocopies