Parental gene: | KIAA0020, ENSCPOG00000008552 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_21:16990701..17020237(+) |
>ENSCPOG00000008552
AGAGTTGCCATGGTGAAAGTCAAAGGGGATAAAAAGCTCACAGGAAGGAATACAATGGCTTCACAAGAAAAAAACAAATT
TCAGAAACACAGTGCTTCTAGTTCTTCAAAGACATTCCTCAAGAAAGATGTTAAGGAGGAGAGACCTAAAGTTACATCTA
AGAAGTTTGAGAAAAGTGCCACAAAACCTGGGAAAAAGGGTGTGAAACAGTTCAAGAATAAGCCACAAGGGGACAAAGGA
CTGAAGAACAAACTCCAGCAGGCAAATAAGTTCAACAAGAAGAGAAAGTTTCAGCCGGACGGTAAAAGTAGCGAATCAGC
ATCCAAGAAAACCAAATGGGATGACTTCAAAAAAAAGAAGAGAGAACTAAAGCAGAGCAGACAGCTCAGTGACAAAACCA
ACTATGACATTGTTGTTCAAGCCAAACAGATTTGGGAGATCTTAAGAAGAAAAGATTGTGACAAAGAAAAAAGAGCGAAG
TTGATGAGTGATTTACAGAAGTTGATTCAAGGGAAAATTAAAACTATCGCGTTTGCTCATGATTCGACCCGTGTGATCCA
GTGTTATATTCAGTATGGTAATGAAGAACAGAGAAGACAGGCTTTTGAAGAATTACGAGATGATTTGGTTGAATTAAGTA
AAGCCAAATATTCCAGAAATATTGTTAAGAAATTTCTCATGTATGGAAGTAAACCACAGATTGCAGAGATAATCAGAAGC
TTCAAAGGCCACGTGAGGAAGATGCTGCGGCATGCGGAAGCCTCTGCCATCGTAGAGTATGCATATAATGACAAGGCCAT
TCTGGAGCAGAGGAACATGCTGACCGAAGAGCTCTATGGGAACACGTTTCAGCTTTACAAGTCTACAGAACATTCTACTC
TGGACAAGGTATTAGAGGTACAGCCAGAAAAATTAGAGCTCATTATGGATGAAATGAAACAGATTCTAACTCCAATGGCT
CAAAAGGAAGCTGTGATTAAGCATTCATTAGTCCATAAAGTATTCTTGGATTTTTTTACCCATGCAACCCCAAAACTCAG
ATCTGAACTGATTGAAGCCATCCGGGAAGCGGTGGTGTACCTGGCACACACACACGATGGTGCCAGGGTGGCTATGCACT
GCTTGTGGCATGGCACACCCAAGGACAGAAAAGTAATTGTGAAGACAATGAAGAGTTACATTGAAAAAGTGGCTAATGGC
CAGTACTCTCACTTGGTTTTGCTGGCAGCATTTGATTGTATTGATGATACTAAGCTTGTGAAGCAGATAATCATATCAGA
AATTATCAGTTCCTTGTCTAACATAGTAAATGACAAATACGGAAGGAAAGTCTTGTTGTATTTACTGAGTCCCAGGGATC
CTGCACATATAGTCCGAGAAATCATTGAAGTTCTGCAGAAAGGAGATGGAAATGCACACAGTAAGAAAGATACAGAGATC
CGCCGTCGTGAGCTCTTAGAAGCTATTTCTCCAGCATTGTTAAAGCATCTACAAGGAAATGCCCAGGAGATGGTGCTGGA
TAAGTCTGCATGTGTGCTGGTGCCTGCCATTCTGGGCTCTGCCACTGGAGACGTTCAGCCTGCCATGGATGCCATCGCCA
GCCTCGCGGCAGCAGAATTACACCCTAGTGGCAAGGATGGAGAGCTTCATGTTGCGGAACATCCTGCAGGACATCTAGTT
TTGAAGTGGCTGATAGAGCAAGACAAAAAGATGAAAGAAAATGGAAGAGAAGGTTGTTTTGCAAAAACCCTTGTAGACCA
TGTTGGTATGAAGAACCTGAAGTCCTGGACTAGTATAAATCGGGGTGCCATCATTCTTTCCAGCCTTCTACAGAGTACAG
ACCAAGAAGTTGCAAATACAGTTAGAGCTGGACTGAAAAGCCTGATTCCCACGTTGGAAAAAAACAAAAACACCAGCAAA
GGAATAGAAATTCTACTTGAAAAACTGACT
AGAGTTGCCATGGTGAAAGTCAAAGGGGATAAAAAGCTCACAGGAAGGAATACAATGGCTTCACAAGAAAAAAACAAATT
TCAGAAACACAGTGCTTCTAGTTCTTCAAAGACATTCCTCAAGAAAGATGTTAAGGAGGAGAGACCTAAAGTTACATCTA
AGAAGTTTGAGAAAAGTGCCACAAAACCTGGGAAAAAGGGTGTGAAACAGTTCAAGAATAAGCCACAAGGGGACAAAGGA
CTGAAGAACAAACTCCAGCAGGCAAATAAGTTCAACAAGAAGAGAAAGTTTCAGCCGGACGGTAAAAGTAGCGAATCAGC
ATCCAAGAAAACCAAATGGGATGACTTCAAAAAAAAGAAGAGAGAACTAAAGCAGAGCAGACAGCTCAGTGACAAAACCA
ACTATGACATTGTTGTTCAAGCCAAACAGATTTGGGAGATCTTAAGAAGAAAAGATTGTGACAAAGAAAAAAGAGCGAAG
TTGATGAGTGATTTACAGAAGTTGATTCAAGGGAAAATTAAAACTATCGCGTTTGCTCATGATTCGACCCGTGTGATCCA
GTGTTATATTCAGTATGGTAATGAAGAACAGAGAAGACAGGCTTTTGAAGAATTACGAGATGATTTGGTTGAATTAAGTA
AAGCCAAATATTCCAGAAATATTGTTAAGAAATTTCTCATGTATGGAAGTAAACCACAGATTGCAGAGATAATCAGAAGC
TTCAAAGGCCACGTGAGGAAGATGCTGCGGCATGCGGAAGCCTCTGCCATCGTAGAGTATGCATATAATGACAAGGCCAT
TCTGGAGCAGAGGAACATGCTGACCGAAGAGCTCTATGGGAACACGTTTCAGCTTTACAAGTCTACAGAACATTCTACTC
TGGACAAGGTATTAGAGGTACAGCCAGAAAAATTAGAGCTCATTATGGATGAAATGAAACAGATTCTAACTCCAATGGCT
CAAAAGGAAGCTGTGATTAAGCATTCATTAGTCCATAAAGTATTCTTGGATTTTTTTACCCATGCAACCCCAAAACTCAG
ATCTGAACTGATTGAAGCCATCCGGGAAGCGGTGGTGTACCTGGCACACACACACGATGGTGCCAGGGTGGCTATGCACT
GCTTGTGGCATGGCACACCCAAGGACAGAAAAGTAATTGTGAAGACAATGAAGAGTTACATTGAAAAAGTGGCTAATGGC
CAGTACTCTCACTTGGTTTTGCTGGCAGCATTTGATTGTATTGATGATACTAAGCTTGTGAAGCAGATAATCATATCAGA
AATTATCAGTTCCTTGTCTAACATAGTAAATGACAAATACGGAAGGAAAGTCTTGTTGTATTTACTGAGTCCCAGGGATC
CTGCACATATAGTCCGAGAAATCATTGAAGTTCTGCAGAAAGGAGATGGAAATGCACACAGTAAGAAAGATACAGAGATC
CGCCGTCGTGAGCTCTTAGAAGCTATTTCTCCAGCATTGTTAAAGCATCTACAAGGAAATGCCCAGGAGATGGTGCTGGA
TAAGTCTGCATGTGTGCTGGTGCCTGCCATTCTGGGCTCTGCCACTGGAGACGTTCAGCCTGCCATGGATGCCATCGCCA
GCCTCGCGGCAGCAGAATTACACCCTAGTGGCAAGGATGGAGAGCTTCATGTTGCGGAACATCCTGCAGGACATCTAGTT
TTGAAGTGGCTGATAGAGCAAGACAAAAAGATGAAAGAAAATGGAAGAGAAGGTTGTTTTGCAAAAACCCTTGTAGACCA
TGTTGGTATGAAGAACCTGAAGTCCTGGACTAGTATAAATCGGGGTGCCATCATTCTTTCCAGCCTTCTACAGAGTACAG
ACCAAGAAGTTGCAAATACAGTTAGAGCTGGACTGAAAAGCCTGATTCCCACGTTGGAAAAAAACAAAAACACCAGCAAA
GGAATAGAAATTCTACTTGAAAAACTGACT
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 8 .75 RPM |
| SRP017611_kidney | 15 .91 RPM |
| SRP017611_brain | 10 .53 RPM |
| SRP040447_lung | 13 .19 RPM |
| SRP040447_skeletal_muscle | 5 .61 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000012187 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000010917 | ortholog_one2many | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000017341 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000041360 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000004189 | ortholog_one2many | 1 retrogene | |
| Sorex araneus | ENSSARG00000000579 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_1158 | 82.20 | 57.85 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000008552 retrocopies