Parental gene:

RFC3, ENSCPOG00000008739

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_6:35300292..35311200(+)


>ENSCPOG00000008739
ATTGAAATCAGCACTATTGCAAGTAATTACCACCTTGAAGTTAATCCCAGTGATGCTGGAAATAGTGATCGAGTCGTGAT
TCAGGAGATGTTGAAAACTGTGGCACAGTCACAGCAACTTGAGACAAACTCTCAAAGAGATTTTAAAGAGACCTTTAAAA
GTGAAATAAATACTAAAATCATTAAAAACACTAAACATGTTCTTGTATTAAGTTTACTTAAATACTTGTTTGTATTTGGA
GTTCTTAGCTTGCTTTTATGTAAAGATTCAAATACTACCACTCTCATGGAAGTAAGGAATCAAAATCTGAAACAACAGTC
ATTTTTCAATATCATTAATCAGATTTGTCATGTGTTATCTACTGTATGCAAAAAGGAAGGTCTGAGTCTTCCTTCACAGC
TGGCTCAGAGAATTGCAGAAAAGTCCTGCAGAAATCTCAGAAAAGCTCTACTGATGTGTGAAGCCTGCAGAGTACAACAG
TATCCTTTTACTGCAGATCAAGAAATCCCTGAGACAGATTGGGAGGTTTATCTGAGGGAGACGGCAAATGCTATTGTCAG
TCAGCAGACGCCACAGAGACTCCTTGAAGTTCGTGGAAGACTGTATGAGCTTCTAACTCATTGTATTCCTCCTGAGATAA
TAATGAAGGGCCTGCTCTCAGAACTTTTACATAATTGTGATGGACAACTGAAAGGGGAAGTTACCCAGATGGCAGCTTAT
TACGAACATCGTCTACAGCTGGGTACCAAAGCCATTTATCACTTGGAAGCGTTTGTGGCCAAATTCATGGCACTTTATAA
GAAGTTCATGGAGGATGGATTGGAAGGCATGATGTTCTGA

Library Parental gene expression (RPM)
SRP017611_brain 4 .14 RPM
SRP017611_kidney 2 .30 RPM
SRP017611_liver 1 .35 RPM
SRP040447_lung 3 .61 RPM
SRP040447_skeletal_muscle 1 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000018380 ortholog_one2one 1 retrogene
retro_cjac_1611,
Myotis lucifugus ENSMLUG00000014088 ortholog_one2one 1 retrogene
retro_mluc_1754,
Mustela putorius furo ENSMPUG00000001885 ortholog_one2one 1 retrogene
retro_mputfur_1073,
Nomascus leucogenys ENSNLEG00000001169 ortholog_one2one 1 retrogene
retro_nleu_674,
Pongo abelii ENSPPYG00000005272 ortholog_one2one 1 retrogene
retro_pabe_2420,
Tupaia belangeri ENSTBEG00000004725 ortholog_one2one 1 retrogene
retro_tbel_4191,
Tarsius syrichta ENSTSYG00000009501 ortholog_one2one 2 retrogenes
retro_tsyr_1772, retro_tsyr_331,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_405 66.84 70.25
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Download FASTA sequences of all ENSCPOG00000008739 retrocopies