Parental gene: | CSTF2, ENSECAG00000009325 |
| Aliases: | None |
| Description: | cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa [Source:HGNC Symbol;Acc:2484] |
| Organism: | Horse (Equus caballus) |
| Coordinates: | X:79266478..79289911(+) |
>ENSECAG00000009325
ATGGCGGGTTTGACTGCGAGGGACCCTGCGGTGGATCGTTCTCTGCGTTCGGTGTTCGTGGGGAACATTCCATATGAGGC
TACTGAAGAGCAGTTAAAGGACGTCTTTTCTGAGGTTGGACCTGTTGTTAGTTATTTATTGGTATATGATAGGGAGACAG
GAAAGCCAAAGGGTTATGGCTTCTGTGAATACCAAGACCAAGAGACGGCTCTTAGTGCCATGCGAAACCTGAATGGGCGT
GAATTCAGCGGGAGAGCACTTCGAGTGGACAATGCTGCCAGTGAAAAGAACAAAGAAGAACTAAAGAGCCTTGGCACTGG
TGCCCCTGTCATTGAATCACCCTATGGAGAGACCATCAGTCCTGAGGATGCCCCTGAGTCCATTAGCAAAGCAGTTGCCA
GTCTTCCACCAGAGCAGATGTTTGAGCTGATGAAACAAATGAAGCTCTGTGTTCAGAACAGTCCCCAGGAAGCACGGAAC
ATGTTACTTCAGAACCCTCAACTGGCTTATGCTTTGCTACAAGCACAGGTAGTGATGAGAATTGTGGATCCAGAGATTGC
CCTGAAAATTCTGCATCGCCAGACAAATATCCCAACGCTGATTGCTGGCAACCCTCAGCCAGTCCACAGCACTGGGCCTG
GCTCAGGATCCAATGTGTCAATGAACCAGCAGAATCCTCAGGCCCCTCAAGCCCAGTCTTTGGGTGGAATGCACGTCAAT
GGTGCACCTCCTCTTATGCAGGCTTCTATGCAAGCTGGAGTTCCAACACCAGGGCAAATGCCAGCATCTGTGACAGGACC
TGGCCCTGGTGCCTTAGCTCCTGGAGGAGGAATGCAGGCCCAAGTTGGAATGCCAGGAAGTGGACCAGTGTCCATGGAGC
GGGGACAAGTGCCGATGCAAGACCCCAGAGCAGCGATGCAGCGTGGGCCCTTGCCTGCCAACGTCCCAACTCCTCGGGGT
CTGTTAGGAGACGCTCCGAATGACCCACGTGGAGGCACTTTACTTTCTGTGACTGGAGAAGTGGAACCTAGAGGTTACCT
GGGACCACCTCATCAGGGTCCACCCATGCACCATGTCCCTGGCCATGACAGCCGTGGCCCACCCCCACATGAGATGAGGG
GAGGGCCATTAGCCGAGCCCAGACCTCTAATGGCAGAGCCAAGAGGACCCATGCTAGATCAGAGGGGTCCACCCTTGGAT
GGCAGAGGTGGAAGAGATCCCCGAGGCATGGATGCACGAGGGATGGAGGCACGAGCCATGGAGGCAAGAGGATTAGATGC
CAGAGGTTTGGAGGCCCGTGCAATGGAAGCCCGTGCAATGGAGGCCCGTGCAATGGAGGCCCGTGCAATGGAGGCCCGTG
CAATGGAAGTCAGAGGGATGGAGGCCAGAAGCATGGATACAAGGGGCCCAGTGCCTGGCCCTAGAGGCCCTATACCTAGT
GGAATTCAGGGTCCCAGTCCAATTAACATGGGGGCAGTTGGACCCCAGGGATCCAGACAGGTCCCAGTCATGCAGGGAGC
AGCCATGCAAGGAGCAAGCATTCAGGGTGGAGGCCAGCCTGGTGGCTTTAGTCCTGGCCAGAACCAAGTCACTCCACAGG
ACCATGAGAAAGCTGCTTTGATCATGCAGGTTCTTCAACTGACTGCAGACCAGATCGCCATGCTGCCTCCTGAGCAAAGG
CAGAGTATCCTGATCTTAAAGGAACAGATACAGAAATCCACTGGAGCACCTTGA
ATGGCGGGTTTGACTGCGAGGGACCCTGCGGTGGATCGTTCTCTGCGTTCGGTGTTCGTGGGGAACATTCCATATGAGGC
TACTGAAGAGCAGTTAAAGGACGTCTTTTCTGAGGTTGGACCTGTTGTTAGTTATTTATTGGTATATGATAGGGAGACAG
GAAAGCCAAAGGGTTATGGCTTCTGTGAATACCAAGACCAAGAGACGGCTCTTAGTGCCATGCGAAACCTGAATGGGCGT
GAATTCAGCGGGAGAGCACTTCGAGTGGACAATGCTGCCAGTGAAAAGAACAAAGAAGAACTAAAGAGCCTTGGCACTGG
TGCCCCTGTCATTGAATCACCCTATGGAGAGACCATCAGTCCTGAGGATGCCCCTGAGTCCATTAGCAAAGCAGTTGCCA
GTCTTCCACCAGAGCAGATGTTTGAGCTGATGAAACAAATGAAGCTCTGTGTTCAGAACAGTCCCCAGGAAGCACGGAAC
ATGTTACTTCAGAACCCTCAACTGGCTTATGCTTTGCTACAAGCACAGGTAGTGATGAGAATTGTGGATCCAGAGATTGC
CCTGAAAATTCTGCATCGCCAGACAAATATCCCAACGCTGATTGCTGGCAACCCTCAGCCAGTCCACAGCACTGGGCCTG
GCTCAGGATCCAATGTGTCAATGAACCAGCAGAATCCTCAGGCCCCTCAAGCCCAGTCTTTGGGTGGAATGCACGTCAAT
GGTGCACCTCCTCTTATGCAGGCTTCTATGCAAGCTGGAGTTCCAACACCAGGGCAAATGCCAGCATCTGTGACAGGACC
TGGCCCTGGTGCCTTAGCTCCTGGAGGAGGAATGCAGGCCCAAGTTGGAATGCCAGGAAGTGGACCAGTGTCCATGGAGC
GGGGACAAGTGCCGATGCAAGACCCCAGAGCAGCGATGCAGCGTGGGCCCTTGCCTGCCAACGTCCCAACTCCTCGGGGT
CTGTTAGGAGACGCTCCGAATGACCCACGTGGAGGCACTTTACTTTCTGTGACTGGAGAAGTGGAACCTAGAGGTTACCT
GGGACCACCTCATCAGGGTCCACCCATGCACCATGTCCCTGGCCATGACAGCCGTGGCCCACCCCCACATGAGATGAGGG
GAGGGCCATTAGCCGAGCCCAGACCTCTAATGGCAGAGCCAAGAGGACCCATGCTAGATCAGAGGGGTCCACCCTTGGAT
GGCAGAGGTGGAAGAGATCCCCGAGGCATGGATGCACGAGGGATGGAGGCACGAGCCATGGAGGCAAGAGGATTAGATGC
CAGAGGTTTGGAGGCCCGTGCAATGGAAGCCCGTGCAATGGAGGCCCGTGCAATGGAGGCCCGTGCAATGGAGGCCCGTG
CAATGGAAGTCAGAGGGATGGAGGCCAGAAGCATGGATACAAGGGGCCCAGTGCCTGGCCCTAGAGGCCCTATACCTAGT
GGAATTCAGGGTCCCAGTCCAATTAACATGGGGGCAGTTGGACCCCAGGGATCCAGACAGGTCCCAGTCATGCAGGGAGC
AGCCATGCAAGGAGCAAGCATTCAGGGTGGAGGCCAGCCTGGTGGCTTTAGTCCTGGCCAGAACCAAGTCACTCCACAGG
ACCATGAGAAAGCTGCTTTGATCATGCAGGTTCTTCAACTGACTGCAGACCAGATCGCCATGCTGCCTCCTGAGCAAAGG
CAGAGTATCCTGATCTTAAAGGAACAGATACAGAAATCCACTGGAGCACCTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 10 .05 RPM |
| SRP021940_embryo | 16 .95 RPM |
| SRP021940_cerebellum | 12 .57 RPM |
| SRP021940_testis | 9 .40 RPM |
| SRP021940_placental_villous | 10 .83 RPM |
| SRP021940_articular_cartilage | 5 .25 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Equus caballus | ENSECAG00000008257 | within_species_paralog | 1 retrogene | |
| Felis catus | ENSFCAG00000007000 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000011186 | ortholog_many2many | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000013556 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_19 | 68.97 | 84.75 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000009325 retrocopies