Parental gene: | UPF1, ENSECAG00000010639 |
| Aliases: | None |
| Description: | UPF1 regulator of nonsense transcripts homolog (yeast) [Source:HGNC Symbol;Acc:9962] |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 21:3406586..3427164(+) |
>ENSECAG00000010639
GTTGGTGGACCCGAGGGCATCCTGCAGAATGGGGCTGTGGATGACAGCGTTGCCAAGACTAGCCAGTTGTTGGCCGAGTT
GAACTTCGAAGAAGATGAAGAAGATACGTATTACACAAAGGATCTCCCCGTACATGCCTGCAGTTACTGTGGAATACACG
ATCCTGCTTGCGTGGTTTACTGTAATACCAGCAAGAAGTGGTTCTGTAATGGACGTGGAAATACTTCTGGCAGCCACATT
GTAAATCACCTCGTGAGGGCAAAGTGCAAAGAGGTGACTCTGCACAAGGATGGGCCGCTGGGGGAGACAGTCCTGGAGTG
TTACAACTGTGGCTGCCGCAACGTCTTCCTCCTTGGCTTCATCCCCGCCAAGGCCGACTCCGTGGTGGTGCTGCTGTGCA
GGCAGCCCTGTGCCAGCCAAAGCAGCCTTAAGGACATCAACTGGGACAGCTCGCAGTGGCAGCCCCTGATCCAGGACCGC
TGCTTCCTGTCTTGGCTGGTCAAGATCCCTTCTGAGCAGGAGCAGCTGCGGGCTCGGCAGATCACTGCCCAGCAGATCAA
CAAGCTGGAGGAGCTCTGGAAGGAAAATCCTTCCGCCACCTTAGAGGACTTGGAGAAGCCAGGGGTGGACGAGGAGCCGC
AGCACGTCCTCCTGCGGTACGAGGACGCCTACCAGTACCAGAACATCTTTGGCCCTCTGGTCAAGCTGGAGGCTGACTAT
GACAAGAAACTGAAAGAGTCCCAGACTCAAGATAACATCACGGTCAGGTGGGACCTGGGCCTTAACAAGAAGAGAATCGC
CTACTTCACTTTGCCCAAGACTGACTCTGACATGCGGCTCATGCAGGGGGATGAGATATGCCTGCGGTACAAAGGGGACC
TGGCGCCCCTGTGGAAAGGGATCGGCCACGTCATCAAGGTCCCTGATAATTATGGCGATGAGATTGCCATTGAGCTGCGG
AGCAGTGTGGGTGCACCCGTGGAGGTGACTCATAACTTCCAGGTGGATTTCGTGTGGAAGTCAACCTCGTTTGACAGGAT
GCAAAGTGCATTGAAAACCTTTGCTGTGGACGAGACGTCCGTGTCAGGCTACATCTACCACAAACTGCTCGGCCATGAGG
TGGAGGATGTGATCATCAAATGCCAGCTGCCAAAGCGCTTCACGGCACAGGGGCTCCCTGACCTTAACCACTCGCAGGTT
TACGCTGTAAAGACTGTGCTGCAGAGGCCGCTGAGCCTGATCCAGGGACCACCTGGCACGGGGAAGACTGTGACCTCGGC
CACCATCGTCTATCACCTTGCTCGACAAGGCAACGGGCCTGTGCTCGTCTGTGCTCCGAGTAACATAGCCGTGGATCAGC
TGACCGAGAAGATCCATCAGACTGGGCTGAAAGTCGTGCGGCTGTGTGCCAAGAGCCGTGAGGCTATCGACTCCCCGGTG
TCGTTCCTCGCCCTGCACAACCAGATCAGGAACATGGATAGCATGCCGGAGCTCCAGAAGCTGCAGCAGCTGAAGGATGA
GACTGGGGAGCTGTCGTCTGCAGACGAGAAGCGGTACCGGGCCCTGAAGCGCACTGCCGAGAGGGAGCTGCTTATGAACG
CAGATGTCATCTGCTGCACGTGTGTGGGTGCAGGCGACCCGAGGCTTGCCAAGATGCAGTTCCGGTCCATTTTAATCGAT
GAAAGCACCCAGGCCACCGAACCAGAGTGCATGGTCCCTGTGGTCCTCGGAGCCAAGCAGCTGATCCTTGTGGGCGACCA
CTGCCAGCTGGGCCCTGTTGTGATGTGCAAGAAGGCCGCCAAGGCCGGGTTGTCCCAGTCGCTCTTCGAACGCCTGGTGG
TGCTGGGCATCCGTCCCATCCGCCTCCAGGTCCAGTATCGGATGCACCCTGCGCTCAGTGCCTTCCCGTCCAACATCTTC
TACGAGGGCTCTCTTCAGAACGGCGTCACTGCAGCGGACCGTGTGAAGAAGGGGTTTGACTTCCAGTGGCCCCAACCTGA
TAAGCCAATGTTCTTCTACGTGACCCAGGGCCAGGAGGAGATCGCCAGCTCGGGCACCTCCTACCTGAACAGGACGGAAG
CCGCAAATGTGGAGAAGATCACCACAAAGCTGCTGAAGGCAGGTGCCAAGCCGGACCAGATCGGCATCATCACGCCCTAC
GAGGGCCAGCGCTCCTACCTGGTGCAGTACATGCAGTTCAGCGGCTCCCTGCACACCAAGCTCTATCAGGAGGTGGAGAT
CGCCAGTGTGGATGCATTCCAGGGGCGCGAGAAGGACTTCATCATCCTCTCCTGTGTGCGCGCCAACGAACACCAAGGCA
TCGGCTTTTTAAACGACCCCAGGCGACTTAACGTGGCCCTGACCAGAGCGCGATACGGGGTCATTATTGTGGGCAACCCA
AAGGCCCTGTCCAAGCAGCCGCTCTGGAACCACCTGCTGAACTACTACAAGGAGCAGAAAGTGCTGGTGGAAGGGCCCCT
GAACAACCTGCGGGAGAGCCTCATGCAGTTCAGCAAGCCCAGGAAGCTGGTCAACACCATCAACCCGGGAGCCCGCTTTA
TGACGACAGCCATGTATGATGCCCGGGAGGCAATTATCCCAGGATCGGTCTATGACCGGAGCAGCCAGGGCCGGCCCTCA
AACATGTACTTCCAGACCCACGACCAGATTGGCATGATCAGTGCCGGCCCCAGCCATGTGGCCGCCATGAACATTCCCAT
CCCTTTCAACCTGGTCATGCCACCCATGCCACCCCCGGGGTATTTCGGACAAGCTAACGGGCCAGCCGCAGGCCGGGGCA
CCCCGAAAGGCAAGACTGGCCGTGGGGGGCGCCAGAAGAACCGCTTTGGGCTCCCTGGACCCAGCCAGACGACTCTCCCC
AACAGCCAGGCCAGCCAGGATGTGGCATCGCAGCCCTTCTCACAGGGGGCACTGACCCAGGGCTACATCTCCATGAGCCA
GCCCTCCCAGATGAGCCAGCCCGGCCTCTCGCAGCCCGAGCTGTCCCAGGACAGTTACCTTGGTGATGAGTTTAAGTCAC
AGATCGATGTGGCGCTGTCACAAGACTCCACGTACCAGGGGGAGCGGGCGTACCAGCACGGTGGAGTGACGGGGCTGTCC
CAGTACTAG
GTTGGTGGACCCGAGGGCATCCTGCAGAATGGGGCTGTGGATGACAGCGTTGCCAAGACTAGCCAGTTGTTGGCCGAGTT
GAACTTCGAAGAAGATGAAGAAGATACGTATTACACAAAGGATCTCCCCGTACATGCCTGCAGTTACTGTGGAATACACG
ATCCTGCTTGCGTGGTTTACTGTAATACCAGCAAGAAGTGGTTCTGTAATGGACGTGGAAATACTTCTGGCAGCCACATT
GTAAATCACCTCGTGAGGGCAAAGTGCAAAGAGGTGACTCTGCACAAGGATGGGCCGCTGGGGGAGACAGTCCTGGAGTG
TTACAACTGTGGCTGCCGCAACGTCTTCCTCCTTGGCTTCATCCCCGCCAAGGCCGACTCCGTGGTGGTGCTGCTGTGCA
GGCAGCCCTGTGCCAGCCAAAGCAGCCTTAAGGACATCAACTGGGACAGCTCGCAGTGGCAGCCCCTGATCCAGGACCGC
TGCTTCCTGTCTTGGCTGGTCAAGATCCCTTCTGAGCAGGAGCAGCTGCGGGCTCGGCAGATCACTGCCCAGCAGATCAA
CAAGCTGGAGGAGCTCTGGAAGGAAAATCCTTCCGCCACCTTAGAGGACTTGGAGAAGCCAGGGGTGGACGAGGAGCCGC
AGCACGTCCTCCTGCGGTACGAGGACGCCTACCAGTACCAGAACATCTTTGGCCCTCTGGTCAAGCTGGAGGCTGACTAT
GACAAGAAACTGAAAGAGTCCCAGACTCAAGATAACATCACGGTCAGGTGGGACCTGGGCCTTAACAAGAAGAGAATCGC
CTACTTCACTTTGCCCAAGACTGACTCTGACATGCGGCTCATGCAGGGGGATGAGATATGCCTGCGGTACAAAGGGGACC
TGGCGCCCCTGTGGAAAGGGATCGGCCACGTCATCAAGGTCCCTGATAATTATGGCGATGAGATTGCCATTGAGCTGCGG
AGCAGTGTGGGTGCACCCGTGGAGGTGACTCATAACTTCCAGGTGGATTTCGTGTGGAAGTCAACCTCGTTTGACAGGAT
GCAAAGTGCATTGAAAACCTTTGCTGTGGACGAGACGTCCGTGTCAGGCTACATCTACCACAAACTGCTCGGCCATGAGG
TGGAGGATGTGATCATCAAATGCCAGCTGCCAAAGCGCTTCACGGCACAGGGGCTCCCTGACCTTAACCACTCGCAGGTT
TACGCTGTAAAGACTGTGCTGCAGAGGCCGCTGAGCCTGATCCAGGGACCACCTGGCACGGGGAAGACTGTGACCTCGGC
CACCATCGTCTATCACCTTGCTCGACAAGGCAACGGGCCTGTGCTCGTCTGTGCTCCGAGTAACATAGCCGTGGATCAGC
TGACCGAGAAGATCCATCAGACTGGGCTGAAAGTCGTGCGGCTGTGTGCCAAGAGCCGTGAGGCTATCGACTCCCCGGTG
TCGTTCCTCGCCCTGCACAACCAGATCAGGAACATGGATAGCATGCCGGAGCTCCAGAAGCTGCAGCAGCTGAAGGATGA
GACTGGGGAGCTGTCGTCTGCAGACGAGAAGCGGTACCGGGCCCTGAAGCGCACTGCCGAGAGGGAGCTGCTTATGAACG
CAGATGTCATCTGCTGCACGTGTGTGGGTGCAGGCGACCCGAGGCTTGCCAAGATGCAGTTCCGGTCCATTTTAATCGAT
GAAAGCACCCAGGCCACCGAACCAGAGTGCATGGTCCCTGTGGTCCTCGGAGCCAAGCAGCTGATCCTTGTGGGCGACCA
CTGCCAGCTGGGCCCTGTTGTGATGTGCAAGAAGGCCGCCAAGGCCGGGTTGTCCCAGTCGCTCTTCGAACGCCTGGTGG
TGCTGGGCATCCGTCCCATCCGCCTCCAGGTCCAGTATCGGATGCACCCTGCGCTCAGTGCCTTCCCGTCCAACATCTTC
TACGAGGGCTCTCTTCAGAACGGCGTCACTGCAGCGGACCGTGTGAAGAAGGGGTTTGACTTCCAGTGGCCCCAACCTGA
TAAGCCAATGTTCTTCTACGTGACCCAGGGCCAGGAGGAGATCGCCAGCTCGGGCACCTCCTACCTGAACAGGACGGAAG
CCGCAAATGTGGAGAAGATCACCACAAAGCTGCTGAAGGCAGGTGCCAAGCCGGACCAGATCGGCATCATCACGCCCTAC
GAGGGCCAGCGCTCCTACCTGGTGCAGTACATGCAGTTCAGCGGCTCCCTGCACACCAAGCTCTATCAGGAGGTGGAGAT
CGCCAGTGTGGATGCATTCCAGGGGCGCGAGAAGGACTTCATCATCCTCTCCTGTGTGCGCGCCAACGAACACCAAGGCA
TCGGCTTTTTAAACGACCCCAGGCGACTTAACGTGGCCCTGACCAGAGCGCGATACGGGGTCATTATTGTGGGCAACCCA
AAGGCCCTGTCCAAGCAGCCGCTCTGGAACCACCTGCTGAACTACTACAAGGAGCAGAAAGTGCTGGTGGAAGGGCCCCT
GAACAACCTGCGGGAGAGCCTCATGCAGTTCAGCAAGCCCAGGAAGCTGGTCAACACCATCAACCCGGGAGCCCGCTTTA
TGACGACAGCCATGTATGATGCCCGGGAGGCAATTATCCCAGGATCGGTCTATGACCGGAGCAGCCAGGGCCGGCCCTCA
AACATGTACTTCCAGACCCACGACCAGATTGGCATGATCAGTGCCGGCCCCAGCCATGTGGCCGCCATGAACATTCCCAT
CCCTTTCAACCTGGTCATGCCACCCATGCCACCCCCGGGGTATTTCGGACAAGCTAACGGGCCAGCCGCAGGCCGGGGCA
CCCCGAAAGGCAAGACTGGCCGTGGGGGGCGCCAGAAGAACCGCTTTGGGCTCCCTGGACCCAGCCAGACGACTCTCCCC
AACAGCCAGGCCAGCCAGGATGTGGCATCGCAGCCCTTCTCACAGGGGGCACTGACCCAGGGCTACATCTCCATGAGCCA
GCCCTCCCAGATGAGCCAGCCCGGCCTCTCGCAGCCCGAGCTGTCCCAGGACAGTTACCTTGGTGATGAGTTTAAGTCAC
AGATCGATGTGGCGCTGTCACAAGACTCCACGTACCAGGGGGAGCGGGCGTACCAGCACGGTGGAGTGACGGGGCTGTCC
CAGTACTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 147 .72 RPM |
| SRP021940_embryo | 170 .77 RPM |
| SRP021940_cerebellum | 177 .66 RPM |
| SRP021940_testis | 414 .54 RPM |
| SRP021940_placental_villous | 68 .37 RPM |
| SRP021940_articular_cartilage | 80 .52 RPM |
No homologs available
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_314 | 71.61 | 51.54 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000010639 retrocopies