Parental gene:

EIF1, ENSECAG00000012516

Aliases:None
Description:eukaryotic translation initiation factor 1 [Source:HGNC Symbol;Acc:3249]
Organism:Horse (Equus caballus)
Coordinates:11:21101644..21103574(-)


>ENSECAG00000012516
ATGTCCGCTATCCAGAACCTCCACTCTTTCGACCCCTTTGCTGATGCAAGTAAGGGTGATGATCTACTTCCTGCTGGCAC
TGAGGATTATATCCATATAAGAATTCAACAGAGAAACGGCAGGAAGACTCTTACTACCGTCCAAGGGATCGCTGATGATT
ACGATAAAAAGAAACTAGTGAAGGCGTTTAAGAAGAAATTTGCCTGCAATGGTACTGTAATTGAGCATCCAGAATATGGA
GAAGTAATTCAACTACAGGGTGACCAGCGCAAGAACATATGCCAGTTCCTGGTAGAGATTGGACTGGCTAAGGAGGACCA
GCTGAAGGTTCATGGGTTTTAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 83 .65 RPM
SRP021940_embryo 66 .54 RPM
SRP021940_cerebellum 146 .14 RPM
SRP021940_testis 247 .20 RPM
SRP021940_placental_villous 163 .91 RPM
SRP021940_articular_cartilage 118 .12 RPM



Species Parental gene accession Homology type Retrogenes number
Dipodomys ordii ENSDORG00000013853 possible_ortholog 4 retrogenes
retro_dord_349, retro_dord_350, retro_dord_663, retro_dord_753,
Rattus norvegicus ENSRNOG00000032769 possible_ortholog 1 retrogene
retro_rnor_520,
Rattus norvegicus ENSRNOG00000033765 possible_ortholog 15 retrogenes
retro_rnor_1088, retro_rnor_1347, retro_rnor_1518, retro_rnor_1744, retro_rnor_1971, retro_rnor_2067, retro_rnor_2171, retro_rnor_2203, retro_rnor_2532, retro_rnor_2548, retro_rnor_2579, retro_rnor_45, retro_rnor_532, retro_rnor_571, retro_rnor_65,
Sorex araneus ENSSARG00000006287 possible_ortholog 1 retrogene
retro_sara_36,
Sarcophilus harrisii ENSSHAG00000005729 possible_ortholog 1 retrogene
retro_shar_42,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_436 74.42 75.22
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Download FASTA sequences of all ENSECAG00000012516 retrocopies