Parental gene:

MKRN1, ENSEEUG00000001133

Aliases:None
Description:makorin ring finger protein 1 [Source:HGNC Symbol;Acc:7112]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:scaffold_248571:171..5710(-)


>ENSEEUG00000001133
TATGAACATAAGCCATTGAAACAAGAAGAAGCAACCGCCATAGACCCACCCTCGAGCCCGGCTCTGGCTGCTTCCTCTAC
TCTCACATCTGTCGTGGGACCAACTGCTGAAATGAACCCGGGCCACGCCGAGTCGGGAAGTTCAAGCTTTGCAGCTGTAG
GAGCAGGCTCCGAAGACTGGGTGAATGCCATTGAGTTTGTTCCCGGGCAGCCCTACTGCGGCCGGACGGCCCCTTCCTGC
ACTGAAGCACCCCTGCAGGGCTCAGTGACCAAGGAAGAATCAGAGAAAGAGCAAACGGCTGTGGAAACAAAGAAGCAGCT
TTGCCCCTATGCTGCGGTGGGCGAGTGCCGGTATGGGGAGAACTGTGTGTATCTCCACGGAGACTCATGTGATATGTGTG
GGCTGCAGGTCCTCCATCCAATGGATGCTGCCCAGAGATCCCAGCACATAAAATCTTGCATTGAGGCCCATGAGAAGGAC
ATGGAGCTCTCTTTCGCCGTACAGCGCAGTAAGGATATGGTGTGCGGGATCTGCATGGAGGTGGTCTACGAGAAGGCCAA
CCCTAGCGAGCGCCGTTTTGGGATTCTGTCCAACTGCAACCACACCTACTGTCTCAAATGCATCCGCAAGTGGAGGAGTG
CTAAGCAGTTCGAGAGCAAGATCATAAAGTCCTGCCCTGAATGCCGGATCACATCTAACTTTGTCATTCCAAGTGAGTAC
TGGGTGGAGGAGAAAGAAGAGAAGCAGAAACTCATTCAGAAATACAAGGAGGCAATGAGCAACAAGGCATGCAGGTATTT
TGATGAAGGCCGTGGGAGCTGCCCATTTGGAGGGAACTGCTTTTACAAGCACGCCTACCCTGACGGCCGTAGAGAAGAGC
CACAGAGGCAGAAAGTGGGAACATCAAGCAGATACCGGGCCCAACGAAGGAACCACTTCTGGGAGCTCATTGAAGAGAGA
GAGAACAGCCACCCCTTTGACCACGACGATGAGGAGGTTGTCACCTTTGAGCTGGGCGAGATGCTGCTCATGCTTTTGGC
TGCAGGTGACGACGACCTGACAGACTCTGAAGACGAGTGGGACTTGTTTCACGATGAGCTGGAGGATTTCTATGACTTGG
ATCTATAG

Library Parental gene expression (RPM)
SRP017611_liver 33 .76 RPM
SRP017611_kidney 65 .08 RPM
SRP017611_brain 97 .01 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000008306 possible_ortholog 2 retrogenes
retro_btau_401, retro_btau_943,
Canis familiaris ENSCAFG00000003953 possible_ortholog 2 retrogenes
retro_cfam_2157, retro_cfam_253,
Callithrix jacchus ENSCJAG00000013474 possible_ortholog 2 retrogenes
retro_cjac_210, retro_cjac_2991,
Cavia porcellus ENSCPOG00000000948 possible_ortholog 1 retrogene
retro_cpor_109,
Gorilla gorilla ENSGGOG00000023977 possible_ortholog 4 retrogenes
retro_ggor_119, retro_ggor_2813, retro_ggor_3031, retro_ggor_381,
Macaca mulatta ENSMMUG00000010420 possible_ortholog 3 retrogenes
retro_mmul_191, retro_mmul_2597, retro_mmul_76,
Pongo abelii ENSPPYG00000018057 possible_ortholog 3 retrogenes
retro_pabe_3435, retro_pabe_3776, retro_pabe_947,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_643 57.71 60.53
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Download FASTA sequences of all ENSEEUG00000001133 retrocopies