Parental gene: | PCDHGA1, ENSEEUG00000002556 |
| Aliases: | None |
| Description: | protocadherin gamma subfamily A, 1 [Source:HGNC Symbol;Acc:8696] |
| Organism: | Hedgehog (Erinaceus europaeus) |
| Coordinates: | GeneScaffold_8728:4743..7816(+) |
>ENSEEUG00000002556
ATGGCGATTCGGGCAGAACTGCCTAGATGCTGGAGGCTTGTTCAGCTGTGCCTTTTTGTGGGGCTGTTGTTGGAAGTTCA
AGCCGGGAAGATCCTCTACTTCGTGCCAGAAGAGACAGTAAAGGGTTTCTTCGTCGGCAGCATCGCTAAAGACCTGGGTC
TACAAGCCCAGGAGCTGGCGGGGCGTGGAATCCGCATCGTCTCCCGAGGTAGGACGCAGCTCTTTGCTTTGAACCCGCGC
AGCGGCAGCTTGGTCACCGCGGGCAGGATCGACCGCGAGGAGCTCTGCGCTCAGAGCGCGCGGTGCCTGGTGAGTTTTAA
CATCTTGGTGGAGGACAAAATGAAGCTTTTCCCTATTGAAGTGGAAATACTTGATATTAATGATAATGCTCCCCACTTCC
AGATAGAGGAACTAGAGTTAAAAATGAATGAGATAACGTCTCCAGGTACCAGGATCCCTCTGCCTTTTGGCCAGGACTTT
GATGTGGGTGTGAATTCGCTACAGAGCTACCAACTCAGCTCCAACCCTCATTTCTTCTTAGATGTGCAACAGGGAGCTGA
TGGGTTGCAACACCCAGAGATGGTGCTCCAGAGCCCCCTGGATAGGGAACAAGAAGCTGTCCATCACCTGGTCCTCACGG
CCTCTGATGGGGGTGATCCAGTCCGTTCTGGAATGCTGCGTATTCATGTTCAAGTAGTGGATGCAAATGTCAATCCTCCA
ACATTTACTCAAGCACAGTACCAAGTGAGTGTCCTGGAGAACGTGCCACTGGGCACTCAGCTACTCACTGTAAAAGCCAC
CGACCCTGATGAAGGAGCCAATGGGGAAGTAACATATGCATTTCACAATATAGACCACAGAGTAGCTCAGATATTTCAGT
TGGATCCTCATATGGGAGAAATAACAAATAAAGAACCCCTGGATTTTGAAGAATACAACTTATATCCAATGGAAATTCAA
GCTCAGGATGGTGCAGGCCTTATGGCCAGGGCAAAGGTGCTGGTCAAAGTTCTGGACATTAATGATAATGCCCCAGAAGT
GACCATCACTTCTGTCACTGCATCAGTTCCAGAAAACTTTCCTCCTGGGACAATAATTGCTCTTATCAATGTGCATGACC
AGGACTCTGGAGACAATGGTCACACTACATGCTCCATTTCTAGAAATCTACCTTTTAAATTAGAAAAGCTAGTTGACAAT
TATTACCGTTTAGTGACAGAAAAAACACTGGACAGAGAACTCACTCCTACCTACAACATCACAGTAACAGCAACAGATCA
AGGAACTCCAGCTCTGTCTACTGAAGCTCACATTTCACTGCATATTACAGATATCAATGACAACTCCCCTGTTTTCTCTC
AGGACTCCTACTCTGCCTACATTCCAGAAAACAACCCCAGAGGAGCCTCAATCTTTTCTGTGACAGCCCATGATGCTGAT
AGCAATGAGAATGCACAAGTCAATTACTTCTTGGCTGAGGACGACATCTTAGGGGCTCCCCTCTCCTCCTATGTGTCAAT
CAACTCAGATATTGGTGTCTTATATGCTCTGTGTTCTTTTGACTATGAGCAGTTCCGTGAACTACAGCTGTGGGTGACAG
CATTGGACAGTGGGAAGCCTCCACTCAGCAGCAATGTGTCCCTGAGGCTGTTCATTCTGGACCAGAATGACAATGTTCCT
GAGATCTTGTACCCCACCCTCCCCACTGATGGTTCCACAGGAGTGGAGCTGGCACCCCGCTCTGCAGAGCCTGGATACCT
GGTGACCAAGGTGGTGGCAGTGGACAGAGACTCAGGCCAGAATGCCTGGCTGTCCTACCGCCTGCTCAAGGCCAGTGAGC
CAGGGCTCTTCTCAGTGGGGCTGCACACAGGTGAGGTGCACACTGCCAGGGCCCTGCTGGACAGAGATGCTCTCAAGCAG
AGCCTGGTGGTGGCAGTGCAGGACCATGGCCAGCCCCCTCTCTCAGCCACTGTCACACTCACTGTGGCCATAGCTGACAG
CATCCCAGATGTGCTGGCTGACCTGGGCAGCCTGGAGTCTCCTGCCAGTCCTGGAGATTCTGACCTCACACTCTACCTGG
TGGTGGCAGTGGCCGTGGTCTCCTGTGTCTTCCTTGCCTTTGTCATCGTGCTGCTGGCTGTCAGGCTGAGGCGCTGGCAC
ACATCCCGCCTGCTCCAGGCTTCAGCAGGTGAACTGGCTGGCCTTCCTGCCTCTCACTTTGTGGGTGTGGATGGGGTGCA
GGCTTTCCTGCAGACCTATTCCCATGAGGTGTCCCTCACTGCAGACTCCAGGAAGAGTCACCTGATCTTCCCCCAGCCCA
ACTATGCTGACACCCTCATCAGCCAGGAGAGCTGTGAGAAAAGGGAATTTCTATCAGCACCTCAGTCTTCCCTTGAGGAC
TCCAAGGAAACATTTTCCCAGGTAAACTTTTATACCTATCTAAATAAAAGTCATGCTTTA
ATGGCGATTCGGGCAGAACTGCCTAGATGCTGGAGGCTTGTTCAGCTGTGCCTTTTTGTGGGGCTGTTGTTGGAAGTTCA
AGCCGGGAAGATCCTCTACTTCGTGCCAGAAGAGACAGTAAAGGGTTTCTTCGTCGGCAGCATCGCTAAAGACCTGGGTC
TACAAGCCCAGGAGCTGGCGGGGCGTGGAATCCGCATCGTCTCCCGAGGTAGGACGCAGCTCTTTGCTTTGAACCCGCGC
AGCGGCAGCTTGGTCACCGCGGGCAGGATCGACCGCGAGGAGCTCTGCGCTCAGAGCGCGCGGTGCCTGGTGAGTTTTAA
CATCTTGGTGGAGGACAAAATGAAGCTTTTCCCTATTGAAGTGGAAATACTTGATATTAATGATAATGCTCCCCACTTCC
AGATAGAGGAACTAGAGTTAAAAATGAATGAGATAACGTCTCCAGGTACCAGGATCCCTCTGCCTTTTGGCCAGGACTTT
GATGTGGGTGTGAATTCGCTACAGAGCTACCAACTCAGCTCCAACCCTCATTTCTTCTTAGATGTGCAACAGGGAGCTGA
TGGGTTGCAACACCCAGAGATGGTGCTCCAGAGCCCCCTGGATAGGGAACAAGAAGCTGTCCATCACCTGGTCCTCACGG
CCTCTGATGGGGGTGATCCAGTCCGTTCTGGAATGCTGCGTATTCATGTTCAAGTAGTGGATGCAAATGTCAATCCTCCA
ACATTTACTCAAGCACAGTACCAAGTGAGTGTCCTGGAGAACGTGCCACTGGGCACTCAGCTACTCACTGTAAAAGCCAC
CGACCCTGATGAAGGAGCCAATGGGGAAGTAACATATGCATTTCACAATATAGACCACAGAGTAGCTCAGATATTTCAGT
TGGATCCTCATATGGGAGAAATAACAAATAAAGAACCCCTGGATTTTGAAGAATACAACTTATATCCAATGGAAATTCAA
GCTCAGGATGGTGCAGGCCTTATGGCCAGGGCAAAGGTGCTGGTCAAAGTTCTGGACATTAATGATAATGCCCCAGAAGT
GACCATCACTTCTGTCACTGCATCAGTTCCAGAAAACTTTCCTCCTGGGACAATAATTGCTCTTATCAATGTGCATGACC
AGGACTCTGGAGACAATGGTCACACTACATGCTCCATTTCTAGAAATCTACCTTTTAAATTAGAAAAGCTAGTTGACAAT
TATTACCGTTTAGTGACAGAAAAAACACTGGACAGAGAACTCACTCCTACCTACAACATCACAGTAACAGCAACAGATCA
AGGAACTCCAGCTCTGTCTACTGAAGCTCACATTTCACTGCATATTACAGATATCAATGACAACTCCCCTGTTTTCTCTC
AGGACTCCTACTCTGCCTACATTCCAGAAAACAACCCCAGAGGAGCCTCAATCTTTTCTGTGACAGCCCATGATGCTGAT
AGCAATGAGAATGCACAAGTCAATTACTTCTTGGCTGAGGACGACATCTTAGGGGCTCCCCTCTCCTCCTATGTGTCAAT
CAACTCAGATATTGGTGTCTTATATGCTCTGTGTTCTTTTGACTATGAGCAGTTCCGTGAACTACAGCTGTGGGTGACAG
CATTGGACAGTGGGAAGCCTCCACTCAGCAGCAATGTGTCCCTGAGGCTGTTCATTCTGGACCAGAATGACAATGTTCCT
GAGATCTTGTACCCCACCCTCCCCACTGATGGTTCCACAGGAGTGGAGCTGGCACCCCGCTCTGCAGAGCCTGGATACCT
GGTGACCAAGGTGGTGGCAGTGGACAGAGACTCAGGCCAGAATGCCTGGCTGTCCTACCGCCTGCTCAAGGCCAGTGAGC
CAGGGCTCTTCTCAGTGGGGCTGCACACAGGTGAGGTGCACACTGCCAGGGCCCTGCTGGACAGAGATGCTCTCAAGCAG
AGCCTGGTGGTGGCAGTGCAGGACCATGGCCAGCCCCCTCTCTCAGCCACTGTCACACTCACTGTGGCCATAGCTGACAG
CATCCCAGATGTGCTGGCTGACCTGGGCAGCCTGGAGTCTCCTGCCAGTCCTGGAGATTCTGACCTCACACTCTACCTGG
TGGTGGCAGTGGCCGTGGTCTCCTGTGTCTTCCTTGCCTTTGTCATCGTGCTGCTGGCTGTCAGGCTGAGGCGCTGGCAC
ACATCCCGCCTGCTCCAGGCTTCAGCAGGTGAACTGGCTGGCCTTCCTGCCTCTCACTTTGTGGGTGTGGATGGGGTGCA
GGCTTTCCTGCAGACCTATTCCCATGAGGTGTCCCTCACTGCAGACTCCAGGAAGAGTCACCTGATCTTCCCCCAGCCCA
ACTATGCTGACACCCTCATCAGCCAGGAGAGCTGTGAGAAAAGGGAATTTCTATCAGCACCTCAGTCTTCCCTTGAGGAC
TCCAAGGAAACATTTTCCCAGGTAAACTTTTATACCTATCTAAATAAAAGTCATGCTTTA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 0 .16 RPM |
| SRP017611_kidney | 0 .75 RPM |
| SRP017611_brain | 6 .77 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ficedula albicollis | ENSFALG00000008476 | ortholog_one2many | 1 retrogene | |
| Pelodiscus sinensis | ENSPSIG00000004827 | ortholog_one2many | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_eeur_140 | 71.77 | 98.05 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_eeur_291 | 74.22 | 97.32 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_eeur_527 | 71.56 | 68.05 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_eeur_630 | 73.72 | 97.44 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_eeur_631 | 69.81 | 75.12 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_eeur_637 | 72.59 | 94.76 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSEEUG00000002556 retrocopies