Parental gene: | MESDC2, ENSG00000117899 |
| Aliases: | MESDC2, BOCA, MESD |
| Description: | mesoderm development candidate 2 [Source:HGNC Symbol;Acc:13520] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 15:81239666..81282219(-) |
>ENSG00000117899
ATGGCGGCTTCCAGGTGGGCGCGCAAGGCCGTGGTCCTGCTTTGTGCCTCTGACCTGCTGCTGCTGCTGCTACTGCTACC
ACCGCCTGGGTCCTGCGCGGCCGAAGGCTCGCCCGGGACGCCCGACGAGTCTACCCCACCTCCCCGGAAGAAGAAGAAGG
ATATTCGCGATTACAATGATGCAGACATGGCGCGTCTTCTGGAGCAATGGGAGAAAGATGATGACATTGAAGAAGGAGAT
CTTCCAGAGCACAAGAGACCTTCAGCACCTGTCGACTTCTCAAAGATAGACCCAAGCAAGCCTGAAAGCATATTGAAAAT
GACGAAAAAAGGGAAGACTCTCATGATGTTTGTCACTGTATCAGGAAGCCCTACTGAGAAGGAGACAGAGGAAATTACGA
GCCTCTGGCAGGGCAGCCTTTTCAATGCCAACTATGACGTCCAGAGGTTCATTGTGGGATCAGACCGTGCTATCTTCATG
CTTCGCGATGGGAGCTACGCCTGGGAGATCAAGGACTTTTTGGTCGGTCAAGACAGGTGTGCTGATGTAACTCTGGAGGG
CCAGGTGTACCCCGGCAAAGGAGGAGGAAGCAAAGAGAAAAATAAAACAAAGCAAGACAAGGGCAAAAAAAAGAAGGAAG
GAGATCTGAAATCTCGGTCTTCCAAGGAAGAAAATCGAGCTGGGAATAAAAGAGAAGACCTGTGA
ATGGCGGCTTCCAGGTGGGCGCGCAAGGCCGTGGTCCTGCTTTGTGCCTCTGACCTGCTGCTGCTGCTGCTACTGCTACC
ACCGCCTGGGTCCTGCGCGGCCGAAGGCTCGCCCGGGACGCCCGACGAGTCTACCCCACCTCCCCGGAAGAAGAAGAAGG
ATATTCGCGATTACAATGATGCAGACATGGCGCGTCTTCTGGAGCAATGGGAGAAAGATGATGACATTGAAGAAGGAGAT
CTTCCAGAGCACAAGAGACCTTCAGCACCTGTCGACTTCTCAAAGATAGACCCAAGCAAGCCTGAAAGCATATTGAAAAT
GACGAAAAAAGGGAAGACTCTCATGATGTTTGTCACTGTATCAGGAAGCCCTACTGAGAAGGAGACAGAGGAAATTACGA
GCCTCTGGCAGGGCAGCCTTTTCAATGCCAACTATGACGTCCAGAGGTTCATTGTGGGATCAGACCGTGCTATCTTCATG
CTTCGCGATGGGAGCTACGCCTGGGAGATCAAGGACTTTTTGGTCGGTCAAGACAGGTGTGCTGATGTAACTCTGGAGGG
CCAGGTGTACCCCGGCAAAGGAGGAGGAAGCAAAGAGAAAAATAAAACAAAGCAAGACAAGGGCAAAAAAAAGAAGGAAG
GAGATCTGAAATCTCGGTCTTCCAAGGAAGAAAATCGAGCTGGGAATAAAAGAGAAGACCTGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 43 .54 RPM |
| bodymap2_lung | 65 .30 RPM |
| bodymap2_breast | 47 .86 RPM |
| bodymap2_adipose | 37 .95 RPM |
| bodymap2_adrenal | 55 .57 RPM |
| bodymap2_skeletal_muscle | 10 .26 RPM |
| bodymap2_thyroid | 97 .83 RPM |
| bodymap2_prostate | 52 .67 RPM |
| bodymap2_colon | 45 .85 RPM |
| bodymap2_testis | 61 .22 RPM |
| bodymap2_brain | 41 .96 RPM |
| bodymap2_heart | 22 .43 RPM |
| bodymap2_white_blood_cells | 63 .41 RPM |
| bodymap2_lymph_node | 59 .10 RPM |
| bodymap2_ovary | 70 .55 RPM |
| bodymap2_kidney | 62 .02 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000007811 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000027583 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000014513 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000019402 | ortholog_one2many | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000016290 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000007366 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_990 | 61.21 | 69.23 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000117899 retrocopies