Parental gene: | SNX6, ENSPPYG00000005736 |
| Aliases: | None |
| Description: | sorting nexin 6 [Source:HGNC Symbol;Acc:14970] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 14:34294574..34360298(-) |
>ENSPPYG00000005736
ATCCGCGCCTGCGCCGGCCCTCGCCTCAGAGCAGCCATGATGGAAGGCCTGGACGACGGCCCGGACTTCCTCTCAGAAGA
GGACCGCGGACTTAAAGCAATAAATGTAGATCTTCAAAGTGATGCTGCTCTGCAGGTGGACATTTCTGATGCTCTTAGTG
AGCGGGATAAAGTAAAATTCACTGTTCACACAAAGAGTTCATTGCCAAATTTTAAACAAAACGAGTTTTCAGTTGTTCGG
CAACATGAGGAATTTATCTGGCTTCATGATTCCTTTGTTGAAAATGAAGACTATGCAGGTTATATCATTCCACCAGCACC
ACCAAGACCTGATTTTGATGCTTCAAGGGAAAAGCTACAGAAGCTTGGTGAAGGAGAAGGGTCAATGACGAAGGAAGAAT
TCACAAAGATGAAACAGGAACTGGAAGCTGAATATTTGGCAATATTCAAGAAGACAGTTGCGATGCATGAAGTGTTCCTG
TGTCGTGTGGCAGCACATCCTATTTTGAGAAAAGATTTAAATTTCCATGTCTTCTTGGAATATAATCAAGATTTGAGTGT
GCGAGGAAAAAATAAAAAAGAGAAACTTGAAGACTTCTTTAAAAACATGGTTAAATCAGCAGATGGAGTAATCGTTTCAG
GAGTAAAGGATGTAGATGATTTCTTTGAGCATGAACGAACATTTCTTTTGGAATATCATAACCGAGTTAAGGATGCATCT
GCTAAATCTGATAGAATGACAAGATCCCACAAAAGTGCTGCAGATGATTACAATAGAATTGGCTCTTCATTATATGCTTT
AGGAACTCAGGATTCTACAGATATATGCAAGTTTTTTCTCAAAGTTTCAGAACTGTTCGATAAAACAAGAGATCTCCTGT
ATCGAAGGTCTAGGTCACTAGTGGATTATGAAAATGCTAATAAAGCACTGGATAAAGCAAGAGCAAAAAATAAAGATGTT
CTGCAGGCCGAAACTTCCCAACAATTATGTTGTCAGAAATTTGAAAAAATATCTGAGTCTGCAAAACAAGAACTTATAGA
TTTTAAGACAAGAAGAGTTGCTGCATTCAGAAAAAATTTAGTGGAACTGGCAGAGTTAGAACTGAAGCATGCAAAGGGTA
ATCTACAGTTGCTGCAGAACTGCCTGGCAGTGTTAAATGGAGACACATAA
ATCCGCGCCTGCGCCGGCCCTCGCCTCAGAGCAGCCATGATGGAAGGCCTGGACGACGGCCCGGACTTCCTCTCAGAAGA
GGACCGCGGACTTAAAGCAATAAATGTAGATCTTCAAAGTGATGCTGCTCTGCAGGTGGACATTTCTGATGCTCTTAGTG
AGCGGGATAAAGTAAAATTCACTGTTCACACAAAGAGTTCATTGCCAAATTTTAAACAAAACGAGTTTTCAGTTGTTCGG
CAACATGAGGAATTTATCTGGCTTCATGATTCCTTTGTTGAAAATGAAGACTATGCAGGTTATATCATTCCACCAGCACC
ACCAAGACCTGATTTTGATGCTTCAAGGGAAAAGCTACAGAAGCTTGGTGAAGGAGAAGGGTCAATGACGAAGGAAGAAT
TCACAAAGATGAAACAGGAACTGGAAGCTGAATATTTGGCAATATTCAAGAAGACAGTTGCGATGCATGAAGTGTTCCTG
TGTCGTGTGGCAGCACATCCTATTTTGAGAAAAGATTTAAATTTCCATGTCTTCTTGGAATATAATCAAGATTTGAGTGT
GCGAGGAAAAAATAAAAAAGAGAAACTTGAAGACTTCTTTAAAAACATGGTTAAATCAGCAGATGGAGTAATCGTTTCAG
GAGTAAAGGATGTAGATGATTTCTTTGAGCATGAACGAACATTTCTTTTGGAATATCATAACCGAGTTAAGGATGCATCT
GCTAAATCTGATAGAATGACAAGATCCCACAAAAGTGCTGCAGATGATTACAATAGAATTGGCTCTTCATTATATGCTTT
AGGAACTCAGGATTCTACAGATATATGCAAGTTTTTTCTCAAAGTTTCAGAACTGTTCGATAAAACAAGAGATCTCCTGT
ATCGAAGGTCTAGGTCACTAGTGGATTATGAAAATGCTAATAAAGCACTGGATAAAGCAAGAGCAAAAAATAAAGATGTT
CTGCAGGCCGAAACTTCCCAACAATTATGTTGTCAGAAATTTGAAAAAATATCTGAGTCTGCAAAACAAGAACTTATAGA
TTTTAAGACAAGAAGAGTTGCTGCATTCAGAAAAAATTTAGTGGAACTGGCAGAGTTAGAACTGAAGCATGCAAAGGGTA
ATCTACAGTTGCTGCAGAACTGCCTGGCAGTGTTAAATGGAGACACATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 7 .13 RPM |
| SRP007412_cerebellum | 12 .89 RPM |
| SRP007412_heart | 7 .83 RPM |
| SRP007412_kidney | 16 .54 RPM |
| SRP007412_liver | 10 .40 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000012873 | ortholog_one2one | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000006862 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000003310 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000010730 | within_species_paralog | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000006253 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_1668 | 85.02 | 72.49 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_1698 | 86.41 | 72.49 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000005736 retrocopies