Parental gene: | SLC31A1, ENSPPYG00000019514 |
| Aliases: | None |
| Description: | high affinity copper uptake protein 1 [Source:RefSeq peptide;Acc:NP_001125663] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 9:109696357..109739684(+) |
>ENSPPYG00000019514
ATGGATCATTCCCACCATATGGGGATGAGCTATATGGACTCCAACAGTACCATGCAACCTTCTCACCATCACCCAACCAC
TTCAGCCTCACACTCCCATGGTGGAGGAGACAGCAGCATGATGATGATGCCTATGACCTTCTACTTTGGCTTTAAGAATG
TGGAACTACTGTTTTCTGGTTTGGTGATCAATACAGCTGGAGAAATGGCTGGAGCTTTTGTGGCAGTGTTTTTACTAGCA
ATGTTCTATGAAGGACTCAAGATAGCCCGAGAGAGCCTGCTGCGTAAGTCACAAGTCAGCATTCGCTACAATTCCATGCC
TGTCCCAGGACCAAATGGAACCATCCTTATGGAGACACACAAAACTGTTGGGCAGCAGATGCTGAGCTTTCCTCACCTCC
TGCAAACAGTGCTGCACATCATCCAGGTGGTCATAAGCTACTTCCTCATGCTCATCTTCATGACCTACAACGGGTACCTC
TGCATTGCAGTAGCAGCAGGGGCCGGTACAGGATACTTCCTTTTCAGCTGGAAGAAGGCAGTGGTAGTGGACATCACAGA
GCATTGCCATTGA
ATGGATCATTCCCACCATATGGGGATGAGCTATATGGACTCCAACAGTACCATGCAACCTTCTCACCATCACCCAACCAC
TTCAGCCTCACACTCCCATGGTGGAGGAGACAGCAGCATGATGATGATGCCTATGACCTTCTACTTTGGCTTTAAGAATG
TGGAACTACTGTTTTCTGGTTTGGTGATCAATACAGCTGGAGAAATGGCTGGAGCTTTTGTGGCAGTGTTTTTACTAGCA
ATGTTCTATGAAGGACTCAAGATAGCCCGAGAGAGCCTGCTGCGTAAGTCACAAGTCAGCATTCGCTACAATTCCATGCC
TGTCCCAGGACCAAATGGAACCATCCTTATGGAGACACACAAAACTGTTGGGCAGCAGATGCTGAGCTTTCCTCACCTCC
TGCAAACAGTGCTGCACATCATCCAGGTGGTCATAAGCTACTTCCTCATGCTCATCTTCATGACCTACAACGGGTACCTC
TGCATTGCAGTAGCAGCAGGGGCCGGTACAGGATACTTCCTTTTCAGCTGGAAGAAGGCAGTGGTAGTGGACATCACAGA
GCATTGCCATTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 13 .82 RPM |
| SRP007412_cerebellum | 8 .51 RPM |
| SRP007412_heart | 8 .43 RPM |
| SRP007412_kidney | 36 .40 RPM |
| SRP007412_liver | 58 .14 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000011908 | ortholog_one2one | 5 retrogenes | |
| Felis catus | ENSFCAG00000005512 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000015425 | ortholog_one2one | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000015008 | ortholog_one2many | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000015299 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000016636 | ortholog_one2one | 1 retrogene | |
| Sorex araneus | ENSSARG00000012787 | ortholog_one2one | 7 retrogenes | |
| Tupaia belangeri | ENSTBEG00000009011 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_847 | 96.53 | 75.79 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_2386 | 91.94 | 96.84 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_3548 | 94.74 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000019514 retrocopies